scholarly journals Theoretical spectroscopic characterization at low temperatures of detectable sulfur-organic compounds: Ethyl mercaptan and dimethyl sulfide

2014 ◽  
Vol 140 (12) ◽  
pp. 124302 ◽  
Author(s):  
M. L. Senent ◽  
C. Puzzarini ◽  
R. Domínguez-Gómez ◽  
M. Carvajal ◽  
M. Hochlaf
Keyword(s):  
Organic Compounds ◽  
Low Temperatures ◽  
Dimethyl Sulfide ◽  
Spectroscopic Characterization ◽  
Ethyl Mercaptan

scholarly journals ACCURATE SPECTROSCOPIC CHARACTERIZATION OF ETHYL MERCAPTAN AND DIMETHYL SULFIDE ISOTOPOLOGUES: A ROUTE TOWARD THEIR ASTROPHYSICAL DETECTION

2014 ◽  
Vol 796 (1) ◽  
pp. 50 ◽  
Author(s):  
C. Puzzarini ◽  
M. L. Senent ◽  
R. Domínguez-Gómez ◽  
M. Carvajal ◽  
M. Hochlaf ◽  
...  
Keyword(s):  
Dimethyl Sulfide ◽  
Spectroscopic Characterization ◽  
Ethyl Mercaptan

scholarly journals Volatile Organic Compounds (VOCs) of Endophytic Fungi Growing on Extracts of the Host, Horseradish (Armoracia rusticana)

Metabolites ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 451 ◽  
Author(s):  
Tamás Plaszkó ◽  
Zsolt Szűcs ◽  
Zoltán Kállai ◽  
Hajnalka Csoma ◽  
Gábor Vasas ◽  
...  
Keyword(s):  
Volatile Organic Compounds ◽  
Organic Compounds ◽  
Soil Fungi ◽  
Dimethyl Sulfide ◽  
Gas Chromatography Mass Spectrometry ◽  
Malt Extract ◽  
Armoracia Rusticana ◽  
Acetate Methyl ◽  
Agar Film ◽  
Volatile Organic

The interaction between plant defensive metabolites and different plant-associated fungal species is of high interest to many disciplines. Volatile organic compounds (VOCs) are natural products that are easily evaporated under ambient conditions. They play a very important role in inter-species communication of microbes and their hosts. In this study, the VOCs produced by 43 different fungal isolates of endophytic and soil fungi during growth on horseradish root (Armoracia rusticana) extract or malt extract agar were examined, by using headspace-gas chromatography-mass spectrometry (headspace-GC-MS) and a high relative surface agar film as a medium. The proposed technique enabled sensitive detection of several typical VOCs (acetone, methyl acetate, methyl formate, ethyl acetate, methyl butanol isomers, styrene, beta-phellandrene), along with glucosinolate decomposition products, including allyl cyanide and allyl isothiocyanate and other sulfur-containing compounds—carbon disulfide, dimethyl sulfide. The VOC patterns of fungi belonging to Setophoma, Paraphoma, Plectosphaerella, Pyrenochaeta, Volutella, Cadophora, Notophoma, and Curvularia genera were described for the first time. The VOC pattern was significantly different among the isolates. The pattern was indicative of putative myrosinase activity for many tested isolates. On the other hand, endophytes and soil fungi as groups could not be separated by VOC pattern or intensity.

Search for molecular biosignatures on Mars: laboratory simulations of UV irradiation of molecule-mineral complexes

2021 ◽  
Author(s):  
Teresa Fornaro ◽  
Giovanni Poggiali ◽  
Maria Angela Corazzi ◽  
Cristina Garcia ◽  
Giulia Dimitri ◽  
...  
Keyword(s):  
Amino Acids ◽  
Organic Compounds ◽  
Uv Irradiation ◽  
Organic Molecules ◽  
Spectroscopic Characterization ◽  
Sample Return ◽  
Laboratory Simulations ◽  
Prebiotic Molecules

<div> </div> <p><strong>Abstract</strong></p> <p>We present laboratory activities of preparation, characterization, and UV irradiation processing of Mars soil analogues, which are key to support both in situ exploration and sample return missions devoted to detection of molecular biosignatures on Mars.</p> <p>In detail we prepared analog mineral samples relevant to the landing sites of past, present and future Mars exploration missions, such as Gale Crater, Jezero Crater, and Oxia Planum. We doped these samples with a large variety of organic molecules (both biotic and prebiotic molecules) like amino acids, nucleotides, monosaccharides, aldehydes, lipids. We investigated molecular photostability under UV irradiation by monitoring in situ possible modifications of infrared spectroscopic features. These investigations provide pivotal information for ground analysis carried out by rovers on Mars.</p> <p><strong>Introduction</strong></p> <p>Laboratory simulations of Mars are key to support the scientific activity and technology development of life detection instruments on board present and upcoming rover missions such as Mars2020 Perseverance [1] and ExoMars2022 Rosalind Franklin [2]. Studies about the stability of organic molecules in a Martian-like environment allow us to explore the conditions for the preservation of molecular biosignatures and develop models for their degradation in the Martian geological record. A systematic study of the effects of UV radiation on a variety of molecule-mineral complexes mimicking Martian soil can be key for the selection of the most interesting samples to analyse in situ or/and collect for sample return. Testing the sensitivity of different techniques for detection of the diagnostic features of molecular biosignatures embedded into mineral matrices as a function of the molecular concentration helps the choice, design and operation of flight instruments, as well as the interpretation of data collected on the ground during mission operative periods.</p> <p><strong>Methods</strong></p> <p>Experimental analyses were conducted in the Astrobiology Laboratory at INAF-Astrophysical Observatory of Arcetri (Firenze, Italy). Laboratory activities pertain to: (i) synthesis of Mars soil analogues doped with organic compounds that are considered potential molecular biosignatures; (ii) UV-irradiation processing of the Mars soil analogues under Martian-like conditions; and (iii) spectroscopic characterization of the Mars soil analogues.</p> <p><strong>Results</strong></p> <p>Such studies have shown to be very informative in identifying mineral deposits most suitable for preservation of organic compounds, while highlighting the complementarity of different techniques for biomarkers detection, which is critical for ensuring the success of space missions devoted to the search for signs of life on Mars.</p> <p>We will present a series of laboratory results on molecular degradation caused by UV on Mars and possible application to detection of organics by Martian rovers [3,4,5,6]. In detail, we investigated the photostability of several amino acids like glycine, alanine, methionine, valine, tryptophan, phenylalanine, glutamic acid, prebiotic molecules like urea, deoxyribose and glycolaldehyde, and biomarkers like nucleotides and phytane adsorbed on relevant Martian analogs. We monitored the degradation of these molecule-mineral complexes through in situ spectroscopic analysis, investigating the reflectance properties of the samples in the NIR/MIR spectral region. Such spectroscopic characterization of molecular alteration products provides support for two upcoming robotic missions to Mars that will employ NIR spectroscopy to look for molecular biosignatures, through the instruments SuperCam on board Mars 2020, ISEM, Ma_MISS and MicrOmega on board ExoMars 2022.</p> <p><strong>Acknowledgements</strong></p> <p>This research was supported by the Italian Space Agency (ASI) grant agreement ExoMars n. 2017-48-H.0.</p> <p><strong>References</strong></p> <p>[1] Farley K. A. et al. (2020) Space Sci. Rev. 216, 142.</p> <p>[2] Vago, J. L. et al. (2017) Astrobiology 6, 309–347.</p> <p>[3] Fornaro T. et al. (2013) Icarus 226, 1068–1085.</p> <p>[4] Fornaro T. et al. (2018) Icarus 313, 38-60.</p> <p>[5] Fornaro T. et al. (2020) Front. Astron. Space Sci. 7:539289.</p> <p>[6] Poggiali G. et al. (2020) Front. Astron. Space Sci. 7:18.</p>

scholarly journals Underway seawater and atmospheric measurements of volatile organic compounds in the Southern Ocean

2020 ◽  
Vol 17 (9) ◽  
pp. 2593-2619 ◽  
Author(s):  
Charel Wohl ◽  
Ian Brown ◽  
Vassilis Kitidis ◽  
Anna E. Jones ◽  
William T. Sturges ◽  
...  
Keyword(s):  
Volatile Organic Compounds ◽  
Southern Ocean ◽  
Organic Compounds ◽  
Dimethyl Sulfide ◽  
Ambient Air ◽  
Atmospheric Measurements ◽  
Mixing Ratios ◽  
Volatile Organic ◽  
Air Mixing ◽  
Net Flux

Abstract. Dimethyl sulfide and volatile organic compounds (VOCs) are important for atmospheric chemistry. The emissions of biogenically derived organic gases, including dimethyl sulfide and especially isoprene, are not well constrained in the Southern Ocean. Due to a paucity of measurements, the role of the ocean in the atmospheric budgets of atmospheric methanol, acetone, and acetaldehyde is even more poorly known. In order to quantify the air–sea fluxes of these gases, we measured their seawater concentrations and air mixing ratios in the Atlantic sector of the Southern Ocean, along a ∼ 11 000 km long transect at approximately 60∘ S in February–April 2019. Concentrations, oceanic saturations, and estimated fluxes of five simultaneously sampled gases (dimethyl sulfide, isoprene, methanol, acetone, and acetaldehyde) are presented here. Campaign mean (±1σ) surface water concentrations of dimethyl sulfide, isoprene, methanol, acetone, and acetaldehyde were 2.60 (±3.94), 0.0133 (±0.0063), 67 (±35), 5.5 (±2.5), and 2.6 (±2.7) nmol dm−3 respectively. In this dataset, seawater isoprene and methanol concentrations correlated positively. Furthermore, seawater acetone, methanol, and isoprene concentrations were found to correlate negatively with the fugacity of carbon dioxide, possibly due to a common biological origin. Campaign mean (±1σ) air mixing ratios of dimethyl sulfide, isoprene, methanol, acetone, and acetaldehyde were 0.17 (±0.09), 0.053 (±0.034), 0.17 (±0.08), 0.081 (±0.031), and 0.049 (±0.040) ppbv. We observed diel changes in averaged acetaldehyde concentrations in seawater and ambient air (and to a lesser degree also for acetone and isoprene), which suggest light-driven production. Campaign mean (±1σ) fluxes of 4.3 (±7.4) µmol m−2 d−1 DMS and 0.028 (±0.021) µmol m−2 d−1 isoprene are determined where a positive flux indicates from the ocean to the atmosphere. Methanol was largely undersaturated in the surface ocean with a mean (±1σ) net flux of −2.4 (±4.7) µmol m−2 d−1, but it also had a few occasional episodes of outgassing. This section of the Southern Ocean was found to be a source and a sink for acetone and acetaldehyde this time of the year, depending on location, resulting in a mean net flux of −0.55 (±1.14) µmol m−2 d−1 for acetone and −0.28 (±1.22) µmol m−2 d−1 for acetaldehyde. The data collected here will be important for constraining the air–sea exchange, cycling, and atmospheric impact of these gases, especially over the Southern Ocean.

scholarly journals Estimation of atmospheric total organic carbon (TOC) – paving the path towards carbon budget closure

2019 ◽  
Vol 19 (1) ◽  
pp. 459-471 ◽  
Author(s):  
Mingxi Yang ◽  
Zoë L. Fleming
Keyword(s):  
Carbon Dioxide ◽  
Organic Carbon ◽  
Total Organic Carbon ◽  
Organic Compounds ◽  
Carbon Budget ◽  
Dimethyl Sulfide ◽  
Anthropogenic Activity ◽  
Heated Sample ◽  
Diurnal Variability ◽  
Marine Air

Abstract. The atmosphere contains a rich variety of reactive organic compounds, including gaseous volatile organic carbon (VOCs), carbonaceous aerosols, and other organic compounds at varying volatility. Here we present a novel and simple approach to measure atmospheric non-methane total organic carbon (TOC) based on catalytic oxidation of organics in bulk air to carbon dioxide. This method shows little sensitivity towards humidity and near 100 % oxidation efficiencies for all VOCs tested. We estimate a best-case hourly precision of 8 ppb C during times of low ambient variability in carbon dioxide, methane, and carbon monoxide (CO). As proof of concept of this approach, we show measurements of TOC+CO during August–September 2016 from a coastal city in the southwest United Kingdom. TOC+CO was substantially elevated during the day on weekdays (occasionally over 2 ppm C) as a result of local anthropogenic activity. On weekends and holidays, with a mean (standard error) of 102 (8) ppb C, TOC+CO was lower and showed much less diurnal variability. TOC+CO was significantly lower when winds were coming off the Atlantic Ocean than when winds were coming off land if we exclude the weekday daytime. By subtracting the estimated CO from TOC+CO, we constrain the mean (uncertainty) TOC in Atlantic-dominated air masses to be around 23 (±≥8) ppb C during this period. A proton-transfer-reaction mass spectrometer (PTR-MS) was deployed at the same time, detecting a large range of organic compounds (oxygenated VOCs, biogenic VOCs, aromatics, dimethyl sulfide). The total speciated VOCs from the PTR-MS, denoted here as Sum(VOC), amounted to a mean (uncertainty) of 12 (±≤3) ppb C in marine air. Possible contributions from a number of known organic compounds present in marine air that were not detected by the PTR-MS are assessed within the context of the TOC budget. Finally, we note that the use of a short, heated sample tube can improve the transmission of organics to the analyzer, while operating our system alternately with and without a particle filter should enable a better separation of semi-volatile and particulate organics from the VOCs within the TOC budget. Future concurrent measurements of TOC, CO, and a more comprehensive range of speciated VOCs would enable a better characterization and understanding of the atmospheric organic carbon budget.

scholarly journals SPECTROSCOPIC CHARACTERIZATION AND DETECTION OF ETHYL MERCAPTAN IN ORION

2014 ◽  
Vol 784 (1) ◽  
pp. L7 ◽  
Author(s):  
L. Kolesniková ◽  
B. Tercero ◽  
J. Cernicharo ◽  
J. L. Alonso ◽  
A. M. Daly ◽  
...  
Keyword(s):  
Spectroscopic Characterization ◽  
Ethyl Mercaptan
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