scholarly journals Ion sizes and finite-size corrections for ionic-solvation free energies

1997 ◽  
Vol 107 (21) ◽  
pp. 9275-9277 ◽  
Author(s):  
Gerhard Hummer ◽  
Lawrence R. Pratt ◽  
Angel E. García
Keyword(s):  
Finite Size ◽  
Free Energies ◽  
Ionic Solvation ◽  
Solvation Free Energies ◽  
Finite Size Corrections

scholarly journals Finite-size corrections to the free energies of crystalline solids

2000 ◽  
Vol 112 (12) ◽  
pp. 5339-5342 ◽  
Author(s):  
J. M. Polson ◽  
E. Trizac ◽  
S. Pronk ◽  
D. Frenkel
Keyword(s):  
Finite Size ◽  
Crystalline Solids ◽  
Free Energies ◽  
Finite Size Corrections

Equivalence of M- and P-Summation in Calculations of Ionic Solvation Free Energies

2017 ◽  
Vol 121 (7) ◽  
pp. 1525-1530 ◽  
Author(s):  
Thomas Simonson ◽  
Gerhard Hummer ◽  
Benoît Roux
Keyword(s):  
Free Energies ◽  
Ionic Solvation ◽  
Solvation Free Energies

scholarly journals Exact finite-size corrections and corner free energies for the c=−2 universality class

2014 ◽  
Vol 884 ◽  
pp. 157-171 ◽  
Author(s):  
Nickolay Izmailian ◽  
Ralph Kenna ◽  
Wenan Guo ◽  
Xintian Wu
Keyword(s):  
Finite Size ◽  
Universality Class ◽  
Free Energies ◽  
Finite Size Corrections

2-Deoxyribose Radicals in the Gas Phase and Aqueous Solution. Transient Intermediates of Hydrogen Atom Abstraction from 2-Deoxyribofuranose

2005 ◽  
Vol 70 (11) ◽  
pp. 1769-1786 ◽  
Author(s):  
Luc A. Vannier ◽  
Chunxiang Yao ◽  
František Tureček
Keyword(s):  
Aqueous Solution ◽  
Hydrogen Atom ◽  
Gas Phase ◽  
Computational Study ◽  
Hydrogen Atom Abstraction ◽  
Oh Radical ◽  
Free Energies ◽  
Intramolecular Hydrogen ◽  
Solvation Free Energies ◽  
Transient Intermediates

A computational study at correlated levels of theory is reported to address the structures and energetics of transient radicals produced by hydrogen atom abstraction from C-1, C-2, C-3, C-4, C-5, O-1, O-3, and O-5 positions in 2-deoxyribofuranose in the gas phase and in aqueous solution. In general, the carbon-centered radicals are found to be thermodynamically and kinetically more stable than the oxygen-centered ones. The most stable gas-phase radical, 2-deoxyribofuranos-5-yl (5), is produced by H-atom abstraction from C-5 and stabilized by an intramolecular hydrogen bond between the O-5 hydroxy group and O-1. The order of radical stabilities is altered in aqueous solution due to different solvation free energies. These prefer conformers that lack intramolecular hydrogen bonds and expose O-H bonds to the solvent. Carbon-centered deoxyribose radicals can undergo competitive dissociations by loss of H atoms, OH radical, or by ring cleavages that all require threshold dissociation or transition state energies >100 kJ mol-1. This points to largely non-specific dissociations of 2-deoxyribose radicals when produced by exothermic hydrogen atom abstraction from the saccharide molecule. Oxygen-centered 2-deoxyribose radicals show only marginal thermodynamic and kinetic stability and are expected to readily fragment upon formation.

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