Simulation of the Structure and Dynamics of Superhelical and Linear DNA by a Second-Order Brownian Dynamics Algorithm with Hydrodynamic Interactions

Sediment formation by Brownian dynamics simulation: Effect of colloidal and hydrodynamic interactions on the sediment structure

The Journal of Chemical Physics ◽

10.1063/1.450879 ◽

1986 ◽

Vol 85 (7) ◽

pp. 4079-4086 ◽

Cited By ~ 53

Author(s):

Geoffrey C. Ansell ◽

Eric Dickinson

Keyword(s):

Brownian Dynamics ◽

Dynamics Simulation ◽

Hydrodynamic Interactions ◽

Brownian Dynamics Simulation ◽

Sediment Structure ◽

Sediment Formation

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Molecule-Centered Method for Accelerating the Calculation of Hydrodynamic Interactions in Brownian Dynamics Simulations Containing Many Flexible Biomolecules

Journal of Chemical Theory and Computation ◽

10.1021/ct400240w ◽

2013 ◽

Vol 9 (7) ◽

pp. 3224-3239 ◽

Cited By ~ 8

Author(s):

Adrian H. Elcock

Keyword(s):

Brownian Dynamics ◽

Hydrodynamic Interactions ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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Second-order boundary element method calculations of hydrodynamic interactions between particles in close proximity

International Journal for Numerical Methods in Fluids ◽

10.1002/fld.1650140905 ◽

1992 ◽

Vol 14 (9) ◽

pp. 1063-1086 ◽

Cited By ~ 20

Author(s):

Chiu Y. Chan ◽

Antony N. Beris ◽

Suresh G. Advani

Keyword(s):

Boundary Element Method ◽

Boundary Element ◽

Second Order ◽

Hydrodynamic Interactions ◽

Close Proximity ◽

Element Method

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An iterative method for hydrodynamic interactions in Brownian dynamics simulations of polymer dynamics

The Journal of Chemical Physics ◽

10.1063/1.4993218 ◽

2017 ◽

Vol 147 (2) ◽

pp. 024904 ◽

Cited By ~ 9

Author(s):

Linling Miao ◽

Charles D. Young ◽

Charles E. Sing

Keyword(s):

Iterative Method ◽

Brownian Dynamics ◽

Hydrodynamic Interactions ◽

Polymer Dynamics ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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Brownian dynamics simulation of flexible polymer chains with excluded volume and hydrodynamic interactions. A comparison with Monte Carlo and theoretical results

Polymer ◽

10.1016/0032-3861(92)91106-c ◽

1992 ◽

Vol 33 (16) ◽

pp. 3477-3481 ◽

Cited By ~ 21

Author(s):

Antonio Rey ◽

Juan J. Freire ◽

JoséGarcía de la Torre

Keyword(s):

Monte Carlo ◽

Brownian Dynamics ◽

Polymer Chains ◽

Dynamics Simulation ◽

Hydrodynamic Interactions ◽

Excluded Volume ◽

Brownian Dynamics Simulation ◽

Flexible Polymer ◽

Theoretical Results

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Brownian dynamics simulation of linear polymers under elongational flow: Bead–rod model with hydrodynamic interactions

The Journal of Chemical Physics ◽

10.1063/1.1493187 ◽

2002 ◽

Vol 117 (8) ◽

pp. 4030-4041 ◽

Cited By ~ 26

Author(s):

Igor M. Neelov ◽

David B. Adolf ◽

Alexey V. Lyulin ◽

Geoffrey R. Davies

Keyword(s):

Brownian Dynamics ◽

Elongational Flow ◽

Dynamics Simulation ◽

Hydrodynamic Interactions ◽

Linear Polymers ◽

Brownian Dynamics Simulation ◽

Rod Model

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Hydrodynamically Coupled Brownian Dynamics: A coarse-grain particle-based Brownian dynamics technique with hydrodynamic interactions for modeling self-developing flow of polymer solutions

The Journal of Chemical Physics ◽

10.1063/1.5006627 ◽

2018 ◽

Vol 148 (3) ◽

pp. 034902

Author(s):

V. R. Ahuja ◽

J. van der Gucht ◽

W. J. Briels

Keyword(s):

Brownian Dynamics ◽

Polymer Solutions ◽

Hydrodynamic Interactions ◽

Coarse Grain ◽

Developing Flow

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Looping Dynamics of Linear DNA Molecules and the Effect of DNA Curvature: A Study by Brownian Dynamics Simulation

Biophysical Journal ◽

10.1016/s0006-3495(98)74002-0 ◽

1998 ◽

Vol 74 (2) ◽

pp. 773-779 ◽

Cited By ~ 55

Author(s):

Holger Merlitz ◽

Karsten Rippe ◽

Konstantin V. Klenin ◽

Jörg Langowski

Keyword(s):

Brownian Dynamics ◽

Dynamics Simulation ◽

Dna Curvature ◽

Dna Molecules ◽

Brownian Dynamics Simulation ◽

Linear Dna

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Brownian dynamics simulation of polymer collapse in a poor solvent: influence of implicit hydrodynamic interactions

Soft Matter ◽

10.1039/b717350d ◽

2008 ◽

Vol 4 (6) ◽

pp. 1196 ◽

Cited By ~ 32

Author(s):

Tri Thanh Pham ◽

Mohit Bajaj ◽

J. Ravi Prakash

Keyword(s):

Brownian Dynamics ◽

Dynamics Simulation ◽

Hydrodynamic Interactions ◽

Brownian Dynamics Simulation ◽

Polymer Collapse ◽

Solvent Influence ◽

Poor Solvent

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Brownian dynamics method for simulation of binding kinetics of patterned colloidal spheres with hydrodynamic interactions

The Journal of Chemical Physics ◽

10.1063/1.4802198 ◽

2013 ◽

Vol 138 (17) ◽

pp. 174904 ◽

Cited By ~ 4

Author(s):

Jun Liu ◽

Ronald G. Larson

Keyword(s):

Brownian Dynamics ◽

Binding Kinetics ◽

Hydrodynamic Interactions ◽

Colloidal Spheres ◽

Kinetics Of ◽

Dynamics Method

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