scholarly journals Ionic force field optimization based on single-ion and ion-pair solvation properties: Going beyond standard mixing rules

2012 ◽  
Vol 136 (12) ◽  
pp. 124103 ◽  
Author(s):  
Maria Fyta ◽  
Roland R. Netz
2010 ◽  
Vol 132 (2) ◽  
pp. 024911 ◽  
Author(s):  
Maria Fyta ◽  
Immanuel Kalcher ◽  
Joachim Dzubiella ◽  
Luboš Vrbka ◽  
Roland R. Netz
Keyword(s):  
Ion Pair ◽  

1986 ◽  
Vol 84 (9) ◽  
pp. 4774-4778 ◽  
Author(s):  
Yoshiki Matsui ◽  
Kiyoshi Ezumi ◽  
Kouji Iwatani

2021 ◽  
Author(s):  
Sebastian Falkner ◽  
Nadine Schwierz

Water exchange between the first and second hydration shell is essential for the role of Mg2+ in biochemical processes. In order to provide microscopic insights into the exchange mechanism, we resolve the exchange pathways by all-atom molecular dynamics simulations and transition path sampling. Since the exchange kinetics relies on the choice of the water model and the ionic force field, we systematically investigate the influence of seven different polarizable and non-polarizable water and three different Mg2+ models. In all cases, water exchange can occur either via an indirect or direct mechanism (exchanging molecules occupy different/same position on water octahedron). In addition, the results reveal a crossover from an interchange dissociative (Id) to an associative (Ia) reaction mechanism dependent on the range of the Mg2+-water interaction potential of the respective force field. Standard non-polarizable force fields follow the Id mechanism in agreement with experimental results. By contrast, polarizable and long-ranged non-polarizable force fields follow the Ia mechanism. Our results provide a comprehensive view on the influence of the water model and ionic force field on the exchange dynamics and the foundation to assess the choice of the force field in biomolecular simulations.


2013 ◽  
Vol 9 (10) ◽  
pp. 4574-4584 ◽  
Author(s):  
Fabio Sterpone ◽  
Phuong H. Nguyen ◽  
Maria Kalimeri ◽  
Philippe Derreumaux

2008 ◽  
Vol 403 (17) ◽  
pp. 2797-2801
Author(s):  
Z. Çiçek Önem ◽  
Z. Akdeniz ◽  
M.P. Tosi
Keyword(s):  

1997 ◽  
Vol 90 (3) ◽  
pp. 495-497
Author(s):  
CLAUDIO ESPOSTI ◽  
FILIPPO TAMASSIA ◽  
CRISTINA PUZZARINI ◽  
RICCARDO TARRONI ◽  
ZDENEK ZELINGER

1976 ◽  
Vol 73 ◽  
pp. 1051-1057
Author(s):  
Sadao Isotani ◽  
Alain J.-P. Alix

2020 ◽  
pp. 8-12
Author(s):  
Alexandr V. Oborin ◽  
Anna Y. Villevalde ◽  
Sergey G. Trofimchuk

The results of development of the national primary standard of air kerma, air kerma rate, exposure, exposure rate and energy flux for X-rays and gamma radiation GET 8-2011 in 2019 are presented according to the recommendations of the ICRU Report No. 90 “Key Data for Ionizing-Radiation Dosimetry: Measurement Standards and Applications”. The following changes are made to the equations for the units determination with the standard: in the field of X-rays, new correction coefficients of the free-air ionization chambers are introduced and the relative standard uncertainty of the average energy to create an ion pair in air is changed; in the field of gamma radiation, the product of the average energy to create an ion pair in air and the electron stopping-power graphite to air ratio for the cavity ionization chambers is changed. More accurate values of the units reproduced by GET 8-2019 are obtained and new metrological characteristics of the standard are stated.


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