Simulation of the two-dimensional electronic spectra of the Fenna-Matthews-Olson complex using the hierarchical equations of motion method

2011 ◽  
Vol 134 (19) ◽  
pp. 194508 ◽  
Author(s):  
Liping Chen ◽  
Renhui Zheng ◽  
Yuanyuan Jing ◽  
Qiang Shi
Keyword(s):  
Electronic Spectra ◽  
Equations Of Motion ◽  
Two Dimensional ◽  
Motion Method

Two-dimensional leaps in near-critical flow over isolated orography

2005 ◽  
Vol 461 (2064) ◽  
pp. 3747-3763 ◽  
Author(s):  
E.R Johnson ◽  
G.G Vilenski
Keyword(s):  
Unsteady Flow ◽  
Equations Of Motion ◽  
Fold Increase ◽  
Flow Speed ◽  
Two Dimensional ◽  
Subcritical Flow ◽  
One Dimensional ◽  
Petviashvili Equation ◽  
Lee Wave ◽  
Supercritical Flows

This paper describes steady two-dimensional disturbances forced on the interface of a two-layer fluid by flow over an isolated obstacle. The oncoming flow speed is close to the linear longwave speed and the layer densities, layer depths and obstacle height are chosen so that the equations of motion reduce to the forced two-dimensional Korteweg–de Vries equation with cubic nonlinearity, i.e. the forced extended Kadomtsev–Petviashvili equation. The distinctive feature noted here is the appearance in the far lee-wave wake behind obstacles in subcritical flow of a ‘table-top’ wave extending almost one-dimensionally for many obstacles widths across the flow. Numerical integrations show that the most important parameter determining whether this wave appears is the departure from criticality, with the wave appearing in slightly subcritical flows but being destroyed by two-dimensional effects behind even quite long ridges in even moderately subcritical flow. The wave appears after the flow has passed through a transition from subcritical to supercritical over the obstacle and its leading and trailing edges resemble dissipationless leaps standing in supercritical flow. Two-dimensional steady supercritical flows are related to one-dimensional unsteady flows with time in the unsteady flow associated with a slow cross-stream variable in the two-dimensional flows. Thus the wide cross-stream extent of the table-top wave appears to derive from the combination of its occurrence in a supercritical region embedded in the subcritical flow and the propagation without change of form of table-top waves in one-dimensional unsteady flow. The table-top wave here is associated with a resonant steepening of the transition above the obstacle and a consequent twelve-fold increase in drag. Remarkably, the table-top wave is generated equally strongly and extends laterally equally as far behind an axisymmetric obstacle as behind a ridge and so leads to subcritical flows differing significantly from linear predictions.

EQUIVALENCE OF TWO-DIMENSIONAL GRAVITIES

1990 ◽  
Vol 05 (16) ◽  
pp. 1251-1258 ◽  
Author(s):  
NOUREDDINE MOHAMMEDI
Keyword(s):  
Gauge Theory ◽  
Explicit Solution ◽  
Light Cone ◽  
Equations Of Motion ◽  
Two Dimensional ◽  
Induced Gravity ◽  
Light Cone Gauge ◽  
Dimensional Gravity ◽  
The Relationship ◽  
Chern Simons

We find the relationship between the Jackiw-Teitelboim model of two-dimensional gravity and the SL (2, R) induced gravity. These are shown to be related to a two-dimensional gauge theory obtained by dimensionally reducing the Chern-Simons action of the 2+1 dimensional gravity. We present an explicit solution to the equations of motion of the auxiliary field of the Jackiw-Teitelboim model in the light-cone gauge. A renormalization of the cosmological constant is also given.

scholarly journals Two-dimensional electronic spectroscopy as a tool for tracking molecular conformations in DNA/RNA aggregates

2018 ◽  
Vol 207 ◽  
pp. 233-250 ◽  
Author(s):  
Javier Segarra-Martí ◽  
Vishal K. Jaiswal ◽  
Ana Julieta Pepino ◽  
Angelo Giussani ◽  
Artur Nenov ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Ground State ◽  
Electronic Spectra ◽  
Crucial Role ◽  
Electronic Spectroscopy ◽  
Two Dimensional ◽  
Molecular Conformations ◽  
Computational Strategy

A computational strategy to simulate two-dimensional electronic spectra (2DES) is introduced, which allows characterising ground state conformations of flexible nucleobase aggregates that play a crucial role in nucleic acid photochemistry.

The origin of absorptive features in the two-dimensional electronic spectra of rhodopsin

2018 ◽  
Vol 20 (18) ◽  
pp. 12746-12754 ◽  
Author(s):  
Marwa H. Farag ◽  
Thomas L. C. Jansen ◽  
Jasper Knoester
Keyword(s):  
Electronic Spectra ◽  
Two Dimensional ◽  
Model Hamiltonian

A three-state three-mode model Hamiltonian reveals the origin of the absorptive features in the two-dimensional electronic spectra of rhodopsin.

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