Formulation of a Cell Model Using Periodic Boundary Conditions

1961 ◽  
Vol 35 (2) ◽  
pp. 486-492 ◽  
Author(s):  
David R. Squire ◽  
Zevi W. Salsburg
Keyword(s):  
Boundary Conditions ◽  
Periodic Boundary ◽  
Cell Model ◽  
Periodic Boundary Conditions ◽  
A Cell

scholarly journals Osmotic pressure in polyelectrolyte solutions: cell-model and bulk simulations

Soft Matter ◽  
2018 ◽  
Vol 14 (28) ◽  
pp. 5832-5846 ◽  
Author(s):  
Magnus Ullner ◽  
Khawla Qamhieh ◽  
Bernard Cabane
Keyword(s):  
Boundary Conditions ◽  
Osmotic Pressure ◽  
Periodic Boundary ◽  
Cell Model ◽  
Periodic Boundary Conditions ◽  
Spherical Cell ◽  
Polyelectrolyte Solutions

The osmotic pressure of polyelectrolyte solutions as a function of concentration has been calculated by simulations of a spherical cell model and by simulations with periodic boundary conditions.

Molecular Dynamics Using Non-Variational Polarizable Force Fields: Theory, Periodic Boundary Conditions Implementation and Application to the Bond Capacity Model

2019 ◽  
Author(s):  
Pier Paolo Poier ◽  
Louis Lagardere ◽  
Jean-Philip Piquemal ◽  
Frank Jensen
Keyword(s):  
Boundary Conditions ◽  
Periodic Boundary ◽  
Force Fields ◽  
Periodic Boundary Conditions ◽  
Computational Effort ◽  
Polarizable Force Fields ◽  
Energy Models ◽  
Capacity Model ◽  
Energy Gradient ◽  
Polarization Models

<div> <div> <div> <p>We extend the framework for polarizable force fields to include the case where the electrostatic multipoles are not determined by a variational minimization of the electrostatic energy. Such models formally require that the polarization response is calculated for all possible geometrical perturbations in order to obtain the energy gradient required for performing molecular dynamics simulations. </p><div> <div> <div> <p>By making use of a Lagrange formalism, however, this computational demanding task can be re- placed by solving a single equation similar to that for determining the electrostatic variables themselves. Using the recently proposed bond capacity model that describes molecular polarization at the charge-only level, we show that the energy gradient for non-variational energy models with periodic boundary conditions can be calculated with a computational effort similar to that for variational polarization models. The possibility of separating the equation for calculating the electrostatic variables from the energy expression depending on these variables without a large computational penalty provides flexibility in the design of new force fields. </p><div><div><div> </div> </div> </div> <p> </p><div> <div> <div> <p>variables themselves. Using the recently proposed bond capacity model that describes molecular polarization at the charge-only level, we show that the energy gradient for non-variational energy models with periodic boundary conditions can be calculated with a computational effort similar to that for variational polarization models. The possibility of separating the equation for calculating the electrostatic variables from the energy expression depending on these variables without a large computational penalty provides flexibility in the design of new force fields. </p> </div> </div> </div> </div> </div> </div> </div> </div> </div>

scholarly journals Sharp Lyapunov-type inequalities for second-order half-linear difference equations with different kinds of boundary conditions

2021 ◽  
Vol 115 (3) ◽  
Author(s):  
Robert Stegliński
Keyword(s):  
Difference Equation ◽  
Boundary Conditions ◽  
Difference Equations ◽  
Periodic Boundary ◽  
Periodic Boundary Conditions ◽  
Second Order ◽  
Linear Difference Equations ◽  
Order Difference ◽  
Second Order Difference Equation ◽  
Order Difference Equation

AbstractIn this work, we establish optimal Lyapunov-type inequalities for the second-order difference equation with p-Laplacian $$\begin{aligned} \Delta (\left| \Delta u(k-1)\right| ^{p-2}\Delta u(k-1))+a(k)\left| u(k)\right| ^{p-2}u(k)=0 \end{aligned}$$ Δ ( Δ u ( k - 1 ) p - 2 Δ u ( k - 1 ) ) + a ( k ) u ( k ) p - 2 u ( k ) = 0 with Dirichlet, Neumann, mixed, periodic and anti-periodic boundary conditions.

Sign in / Sign up

Export Citation Format

Share Document