Analysis of community composition of biofilms in a submerged filter system for the removal of ammonia and phenol from industrial wastewater

2006 ◽  
Vol 34 (1) ◽  
pp. 165-168 ◽  
Author(s):  
C. Cortés-Lorenzo ◽  
M.L. Molina-Muñoz ◽  
B. Gómez-Villalba ◽  
R. Vilchez ◽  
A. Ramos ◽  
...  
Keyword(s):  
Bacterial Diversity ◽  
Industrial Wastewater ◽  
Treatment Plant ◽  
Hypervariable Region ◽  
Spatial Diversity ◽  
Rrna Gene ◽  
Plant Laboratory ◽  
Degrading Bacteria ◽  
Gradient Gel Electrophoresis ◽  
16 S Rrna

The bacterial diversity of a submerged filter, used for the removal of ammonia and phenol from an industrial wastewater with high salinity, was studied by a cultivation-independent approach based on PCR/TGGE (temperature-gradient gel electrophoresis). The wastewater treatment plant (laboratory scale) combined the nitrification and denitrification processes and consisted of two separated columns (one anoxic and one aerated) connected through a valve. The spatial diversity of bacterial communities in the plant biofilms was analysed by taking samples at four different heights in the system. TGGE profiles of PCR-amplified sequences of the 16 S rRNA gene (V3-hypervariable region) showed significant variations of the bacterial diversity, mainly depending on the concentration of O2 along the system. Several bands separated by TGGE were reamplified and sequenced, in order to explore the composition of the microbial communities in the biofilms. Most of the sequenced bands (10 out of 13) were closely related to the 16 S rRNA gene of marine α-proteobacteria, mainly grouping in the periphery of the genus Roseobacter. Other sequences were related to those of γ-proteobacteria, the nitrite oxidizer Nitrospira marina and anaerobic phenol-degrading bacteria of the Desulfobacteraceae.

Characterization of aerobic azo dye-degrading bacteria and their activity in biofilms

1997 ◽  
Vol 36 (1) ◽  
pp. 215-220 ◽  
Author(s):  
M. F. Coughlin ◽  
B. K. Kinkle ◽  
A. Tepper ◽  
P. L. Bishop
Keyword(s):  
Phylogenetic Analysis ◽  
Azo Dyes ◽  
Azo Dye ◽  
Fluorescent Antibody ◽  
Waste Water Treatment ◽  
Treatment Plant ◽  
Waste Water Treatment Plant ◽  
Rrna Gene ◽  
Degrading Bacterium ◽  
Degrading Bacteria

An azo dye-degrading strain, originally named TBX65, was isolated from the mixed liquor of the Mill Creek waste water treatment plant in Cincinnati, Ohio. Strain TBX65 has the unusual ability to aerobically reduce the azo bond of several azo dyes and is able to use some of these dyes as growth substrate. Subsequent investigations have revealed that TBX65 is actually composed of several strains including two azo dye-degrading strains, MC1 and MI2. Strain MI2 is able to use the azo dyes AO7 and AO8 as its sole source of carbon, energy, and nitrogen. In contrast, MC1 can aerobically reduce the azo bond of these dyes but only in the presence of an exogenous source of carbon and nitrogen. Both MC1 and MI2 are Gram negative, rod-shaped bacteria that form yellow colonies. Sequencing and phylogenetic analysis of the 16S rRNA gene of MC1 indicates that it is a strain of Sphingomonas. Based on this phylogenetic analysis, the most closely related strain to MC1 is strain C7, a previously described azo dye-degrading bacterium isolated from biofilms growing in our laboratories. A strain-specific fluorescent antibody has been developed for strains MC1 and MI2, and is being used to determine the survival and azo dye-degrading ability of these strains in biofilms generated in a rotating drum bioreactor.

Bacterial diversity in antibiotic wastewater treatment

2013 ◽  
Vol 68 (12) ◽  
pp. 2676-2682 ◽  
Author(s):  
J. Han ◽  
L. Y. Wang ◽  
B. Y. Cai
Keyword(s):  
Wastewater Treatment ◽  
Bacterial Diversity ◽  
Industrial Wastewater ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Diversity Index ◽  
Batch Reactor ◽  
Community Analysis ◽  
Bacterial Strains ◽  
Wiener Diversity Index ◽  
Gradient Gel Electrophoresis

The bacterial diversity of an antibiotic industrial wastewater treatment system was analyzed to provide the information required for further optimization of this process and for identification of bacterial strains that perform improved degradation of antibiotic industrial wastewater. The total bacterial DNA of samples collected at three stages (aeration, precipitation, and idle) during the sequencing batch reactor (SBR) process were analyzed by polymerase chain reaction–denaturing gradient gel electrophoresis (PCR-DGGE) of the 16 s rDNA V3 regions. Community analysis was conducted in terms of the richness value (S), the dominance degree and the Shannon–Wiener diversity index (H). Rich bacterial diversity was apparent in the aeration stage of the SBR process, and the number of bands in the aeration stage was more abundant than that in the precipitation and idle stages. The DGGE analysis showed 15 bands, six of which were uncultured bacteria, and included one anaerobic and five aerobic bacteria. The microbial community in the aeration stage was the most complex of the whole SBR process, while the dominant bacteria differed in each reaction stage. These results demonstrate the cyclical dynamic changes in the bacterial population during the SBR process for the treatment of antibiotic industrial wastewater.

scholarly journals Changes in Bacterial Diversity Associated with Epithelial Tissue in the Beef Cow Rumen during the Transition to a High-Grain Diet

2011 ◽  
Vol 77 (16) ◽  
pp. 5770-5781 ◽  
Author(s):  
Yanhong Chen ◽  
Gregory B. Penner ◽  
Meiju Li ◽  
Masahito Oba ◽  
Le Luo Guan
Keyword(s):  
Bacterial Diversity ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Pcr Analysis ◽  
Control Group ◽  
Epithelial Tissue ◽  
Rrna Gene ◽  
Content Type ◽  
Beef Cow ◽  
Dietary Transition ◽  
Gradient Gel Electrophoresis

ABSTRACTOur understanding of the ruminal epithelial tissue-associated bacterial (defined as epimural bacteria in this study) community is limited. In this study, we aimed to determine whether diet influences the diversity of the epimural bacterial community in the bovine rumen. Twenty-four beef heifers were randomly assigned to either a rapid grain adaptation (RGA) treatment (n= 18) in which the heifers were allowed to adapt from a diet containing 97% hay to a diet containing 8% hay over 29 days or to the control group (n= 6), which was fed 97% hay. Rumen papillae were collected when the heifers were fed 97%, 25%, and 8% hay diets. PCR-denaturing gradient gel electrophoresis (DGGE) and quantitative real-time PCR analysis were used to characterize rumen epimural bacterial diversity and to estimate the total epimural bacterial population (copy numbers of the 16S rRNA gene). The epimural bacterial diversity from RGA heifers changed (P= 0.01) in response to the rapid dietary transition, whereas it was not affected in control heifers. A total of 88 PCR-DGGE bands were detected, and 44 were identified from phyla includingFirmicutes,Bacteroidetes, andProteobacteria. The bacteriaTreponemasp.,Ruminobactersp., andLachnospiraceaesp. were detected only when heifers were fed 25% and 8% hay diets, suggesting the presence of these bacteria is the result of adaptation to the high-grain diets. In addition, the total estimated population of rumen epimural bacteria was positively correlated with molar proportions of acetate, isobutyrate, and isovalerate, suggesting that they may play a role in volatile fatty acid metabolism in the rumen.

PCR-DGGE Analysis of Bacterial Diversity of Intestinal System in Hyperlipidemia Rats

2013 ◽  
Vol 726-731 ◽  
pp. 898-901
Author(s):  
Ri Na Wu ◽  
Xiao Meng Pang ◽  
Xi Yan Wang ◽  
Jun Rui Wu
Keyword(s):  
Bacterial Diversity ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Intestinal Flora ◽  
Intestinal Bacteria ◽  
Control Group ◽  
Rrna Gene ◽  
Dgge Analysis ◽  
Gradient Gel Electrophoresis ◽  
The Relationship ◽  
Insight Into

Denaturing gradient gel electrophoresis (DGGE) analysis of 16S rRNA gene has been regarded as one of powerful tools for gaining insight into the bacterial diversity of intestinal system. In the present study, hyperlipidemia model was constructed in rat according to the tests of blood lipids. Fecal samples of rats were collected after 60d feeding, and DGGE was used to investigate the diversities of intestinal bacteria in the artificially-induced hyperlipidemia rats and normal rats. The results showed that two patterns had similarities, but there were also some different bacteria communities. Moreover, control group had much more bands than model group on gel, showing species in intestinal of model rats might be deduced by hyperlipidemia. It will be helpful to explore the relationship between hyperlipidemia and intestinal flora.

scholarly journals Quantification of Hyphomicrobium Populations in Activated Sludge from an Industrial Wastewater Treatment System as Determined by 16S rRNA Analysis

2000 ◽  
Vol 66 (3) ◽  
pp. 1167-1174 ◽  
Author(s):  
A. C. Layton ◽  
P. N. Karanth ◽  
C. A. Lajoie ◽  
A. J. Meyers ◽  
I. R. Gregory ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
16S Rrna ◽  
Activated Sludge ◽  
16S Rdna ◽  
Industrial Wastewater ◽  
Bacterial Species ◽  
Treatment Plant ◽  
Rrna Gene ◽  
16S Rrna Analysis ◽  
Industrial Wastewater Treatment

ABSTRACT The bacterial community structure of the activated sludge from a 25 million-gal-per-day industrial wastewater treatment plant was investigated using rRNA analysis. 16S ribosomal DNA (rDNA) libraries were created from three sludge samples taken on different dates. Partial rRNA gene sequences were obtained for 46 rDNA clones, and nearly complete 16S rRNA sequences were obtained for 18 clones. Seventeen of these clones were members of the beta subdivision, and their sequences showed high homology to sequences of known bacterial species as well as published 16S rDNA sequences from other activated sludge sources. Sixteen clones belonged to the alpha subdivision, 7 of which showed similarity to Hyphomicrobium species. This cluster was chosen for further studies due to earlier work onHyphomicrobium sp. strain M3 isolated from this treatment plant. A nearly full-length 16S rDNA sequence was obtained fromHyphomicrobium sp. strain M3. Phylogenetic analysis revealed that Hyphomicrobium sp. strain M3 was 99% similar to Hyphomicrobium denitrificans DSM 1869T inHyphomicrobium cluster II. Three of the cloned sequences from the activated sludge samples also grouped with those ofHyphomicrobium cluster II, with a 96% sequence similarity to that of Hyphomicrobium sp. strain M3. The other four cloned sequences from the activated sludge sample were more closely related to those of the Hyphomicrobium cluster I organisms (95 to 97% similarity). Whole-cell fluorescence hybridization of microorganisms in the activated sludge with genus-specificHyphomicrobium probe S-G-Hypho-1241-a-A-19 enhanced the visualization of Hyphomicrobium and revealed thatHyphomicrobium appears to be abundant both on the outside of flocs and within the floc structure. Dot blot hybridization of activated sludge samples from 1995 with probes designed forHyphomicrobium cluster I and Hyphomicrobiumcluster II indicated that Hyphomicrobium cluster II-positive 16S rRNA dominated over Hyphomicrobium cluster I-positive 16S rRNA by 3- to 12-fold. Hyphomicrobium 16S rRNA comprised approximately 5% of the 16S rRNA in the activated sludge.

scholarly journals Enrichment, Isolation, and Phylogenetic Identification of Polycyclic Aromatic Hydrocarbon-Degrading Bacteria from Elizabeth River Sediments†

2007 ◽  
Vol 74 (4) ◽  
pp. 1176-1182 ◽  
Author(s):  
Edward J. Hilyard ◽  
Joanne M. Jones-Meehan ◽  
Barry J. Spargo ◽  
Russell T. Hill
Keyword(s):  
Denaturing Gradient Gel Electrophoresis ◽  
River Sediments ◽  
Rrna Gene ◽  
Bacterial Strains ◽  
Molecular Analyses ◽  
Selective Enrichment ◽  
Elizabeth River ◽  
Degrading Bacteria ◽  
Polycyclic Aromatic ◽  
Gradient Gel Electrophoresis

ABSTRACT The diversity of indigenous bacteria in sediments from several sites in the Elizabeth River (Virginia) able to degrade multiple polycyclic aromatic hydrocarbons (PAHs) was investigated by the use of classical selective enrichment and molecular analyses. Enrichment cultures containing naphthalene, phenanthrene, fluoranthene, or pyrene as a sole carbon and energy source were monitored by denaturing gradient gel electrophoresis (DGGE) to detect changes in the bacterial-community profile during enrichment and to determine whether the representative strains present were successfully cultured. The DGGE profiles of the final enrichments grown solely on naphthalene and pyrene showed no clear relationship with the site from which the inoculum was obtained. The enrichments grown solely on pyrene for two sample sites had >80% similarity, which suggests that common pyrene-degrading strains may be present in these sediments. The final enrichments grown on fluoranthene and phenanthrene remained diverse by site, suggesting that these strains may be influenced by environmental conditions. One hundred and one isolates were obtained, comprising representatives of the actinomycetes and alpha-, beta-, and gammaproteobacteria, including seven novel isolates with 16S rRNA gene sequences less than 98% similar to known strains. The ability to degrade multiple PAHs was demonstrated by mineralization of 14C-labeled substrate and growth in pure culture. This supports our hypothesis that a high diversity of bacterial strains with the ability to degrade multiple PAHs can be confirmed by the combined use of classical selective enrichment and molecular analyses. This large collection of diverse PAH-degrading strains provides a valuable resource for studies on mechanisms of PAH degradation and bioremediation.

scholarly journals Comparing Metabolic Functionalities, Community Structures, and Dynamics of Herbicide-Degrading Communities Cultivated with Different Substrate Concentrations

2012 ◽  
Vol 79 (1) ◽  
pp. 367-375 ◽  
Author(s):  
Erkin Gözdereliler ◽  
Nico Boon ◽  
Jens Aamand ◽  
Karen De Roy ◽  
Michael S. Granitsiotis ◽  
...  
Keyword(s):  
Denaturing Gradient Gel Electrophoresis ◽  
Nucleic Acid Content ◽  
Cell Physiology ◽  
Rrna Gene ◽  
Low Concentrations ◽  
Degrading Bacteria ◽  
Gradient Gel Electrophoresis ◽  
Herbicide Concentration ◽  
Single Cell Physiology ◽  
High Concentrations

ABSTRACTTwo 4-chloro-2-methylphenoxyacetic acid (MCPA)-degrading enrichment cultures selected from an aquifer on low (0.1 mg liter−1) or high (25 mg liter−1) MCPA concentrations were compared in terms of metabolic activity, community composition, population growth, and single cell physiology. Different community compositions and major shifts in community structure following exposure to different MCPA concentrations were observed using both 16S rRNA gene denaturing gradient gel electrophoresis fingerprinting and pyrosequencing. The communities also differed in their MCPA-mineralizing activities. The enrichments selected on low concentrations mineralized MCPA with shorter lag phases than those selected on high concentrations. Flow cytometry measurements revealed that mineralization led to cell growth. The presence of low-nucleic acid-content bacteria (LNA bacteria) was correlated with mineralization activity in cultures selected on low herbicide concentrations. This suggests that LNA bacteria may play a role in degradation of low herbicide concentrations in aquifers impacted by agriculture. This study shows that subpopulations of herbicide-degrading bacteria that are adapted to different pesticide concentrations can coexist in the same environment and that using a low herbicide concentration enables enrichment of apparently oligotrophic subpopulations.

Biofilm dynamics studied with microsensors and molecular techniques

1998 ◽  
Vol 37 (4-5) ◽  
pp. 125-129 ◽  
Author(s):  
Cecilia M. Santegoeds ◽  
Gerard Muyzer ◽  
Dirk de Beer
Keyword(s):  
Gel Electrophoresis ◽  
Denaturing Gradient Gel Electrophoresis ◽  
Treatment Plant ◽  
Molecular Techniques ◽  
Rrna Gene ◽  
Biofilm Growth ◽  
Sulfide Production ◽  
Gradient Gel Electrophoresis ◽  
Anoxic Zones ◽  
Biofilm Community

Here we present preliminary data on the development of a biofilm from a wastewater treatment plant studied with microsensors and molecular techniques. The development during biofilm growth of oxygen, sulfide and pH profiles was measured with microsensors. Anoxic zones developed within one week and further increased during the following weeks. However, sulfide production was delayed and was first detected in a six-week-old biofilm. With denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA gene fragments the sequence of the bacterial community was followed showing an increasing complexity of the biofilm community during development. In a mature biofilm the influence of nitrate on sulfide production was studied by measuring oxygen, sulfide, pH, nitrite and nitrate profiles with microsensors. Sulfide production was detected deeper in the biofilm and in lower concentrations, when nitrate was added to the medium. The DGGE pattern of the mature biofilm showed both differences and similarities with the DGGE pattern of the 12-week-old biofilm. In particular the RNA pattern changed when nitrate was added to the medium, indicating a change in activity of certain strains.

scholarly journals Development of an mlrA Gene-Directed TaqMan PCR Assay for Quantitative Assessment of Microcystin-Degrading Bacteria within Water Treatment Plant Sand Filter Biofilms

2009 ◽  
Vol 75 (15) ◽  
pp. 5167-5169 ◽  
Author(s):  
Daniel Hoefel ◽  
Caroline M. M. Adriansen ◽  
Magali A. C. Bouyssou ◽  
Christopher P. Saint ◽  
Gayle Newcombe ◽  
...  
Keyword(s):  
Denaturing Gradient Gel Electrophoresis ◽  
Treatment Plant ◽  
Water Treatment Plant ◽  
Pcr Assay ◽  
Sand Filter ◽  
Degrading Bacteria ◽  
Gradient Gel Electrophoresis ◽  
Taqman Pcr ◽  
Biofilm Development ◽  
First Time

ABSTRACT We report for the first time a quantitative mlrA gene-directed TaqMan PCR assay for the rapid detection of microcystin-degrading bacteria. This was applied, in combination with 16S ribosomal DNA-directed quantitative PCR and denaturing gradient gel electrophoresis, to study virgin sand filter column biofilm development and to correlate mlr A gene abundance with microcystin removal efficiency.

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