Anaerobic regulation of hydrogenase transcription in different bacteria

2005 ◽  
Vol 33 (1) ◽  
pp. 36-38 ◽  
Author(s):  
Á.T. Kovács ◽  
G. Rákhely ◽  
J. Balogh ◽  
G. Maróti ◽  
A. Fülöp ◽  
...  
Keyword(s):  
Rhizobium Leguminosarum ◽  
Rhodobacter Capsulatus ◽  
Environmental Changes ◽  
Anaerobic Respiration ◽  
Respiratory Control ◽  
Bacterial Cells ◽  
Hydrogen Metabolism ◽  
Regulatory Systems ◽  
Reducing Conditions ◽  
Anaerobic Regulation

Hydrogen metabolism is closely related to other important metabolic and energetic processes of bacterial cells, such as photosynthesis, anaerobic respiration and sulphur metabolism. Even small environmental changes influence these networks through different regulatory systems. The presence or absence of oxygen is one of the most important signals; how the cascades evolved to transmit this signal in different bacteria is summarized. In many instances, hydrogen is released only under anoxic conditions, because of bioenergetic considerations. Most [NiFe] hydrogenases are inactivated by oxygen, but many of them can be re-activated under reducing conditions. In addition to direct inactivation of the hydrogenases, oxygen can also regulate their expression. The global regulatory systems [FNR (fumarate and nitrate reduction regulator), ArcAB (aerobic respiratory control) and RegAB], which respond to alterations in oxygen content and redox conditions of the environment, have an important role in hydrogenase regulation of several bacteria. FNR-like proteins were shown to be important for the regulation of hydrogenases in Escherichia coli, Thiocapsa roseopersicina and Rhizobium leguminosarum, whereas RegA protein modulates the expression of hupSL genes in Rhodobacter capsulatus.

scholarly journals Interactions among Redox Regulators and the CtrA Phosphorelay in Dinoroseobacter shibae and Rhodobacter capsulatus

2020 ◽  
Vol 8 (4) ◽  
pp. 562
Author(s):  
Sonja Koppenhöfer ◽  
Andrew S. Lang
Keyword(s):  
Regulatory Networks ◽  
Rhodobacter Capsulatus ◽  
Environmental Changes ◽  
Environmental Signals ◽  
Complex Interactions ◽  
Regulatory Systems ◽  
Dinoroseobacter Shibae ◽  
Transcriptional Effect ◽  
First Time ◽  
Encoding Genes

Bacteria employ regulatory networks to detect environmental signals and respond appropriately, often by adjusting gene expression. Some regulatory networks influence many genes, and many genes are affected by multiple regulatory networks. Here, we investigate the extent to which regulatory systems controlling aerobic–anaerobic energetics overlap with the CtrA phosphorelay, an important system that controls a variety of behavioral processes, in two metabolically versatile alphaproteobacteria, Dinoroseobacter shibae and Rhodobacter capsulatus. We analyzed ten available transcriptomic datasets from relevant regulator deletion strains and environmental changes. We found that in D. shibae, the CtrA phosphorelay represses three of the four aerobic–anaerobic Crp/Fnr superfamily regulator-encoding genes (fnrL, dnrD, and especially dnrF). At the same time, all four Crp/Fnr regulators repress all three phosphorelay genes. Loss of dnrD or dnrF resulted in activation of the entire examined CtrA regulon, regardless of oxygen tension. In R. capsulatus FnrL, in silico and ChIP-seq data also suggested regulation of the CtrA regulon, but it was only with loss of the redox regulator RegA where an actual transcriptional effect on the CtrA regulon was observed. For the first time, we show that there are complex interactions between redox regulators and the CtrA phosphorelays in these bacteria and we present several models for how these interactions might occur.

scholarly journals Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Handuo Shi ◽  
Yan Hu ◽  
Pascal D. Odermatt ◽  
Carlos G. Gonzalez ◽  
Lichao Zhang ◽  
...  
Keyword(s):  
Growth Rate ◽  
Time Delay ◽  
Surface Area ◽  
Environmental Changes ◽  
Volume Ratio ◽  
Dynamic Environments ◽  
Bacterial Cells ◽  
Bacterial Growth Rate ◽  
State Size ◽  
Insight Into

AbstractThe steady-state size of bacterial cells correlates with nutrient-determined growth rate. Here, we explore how rod-shaped bacterial cells regulate their morphology during rapid environmental changes. We quantify cellular dimensions throughout passage cycles of stationary-phase cells diluted into fresh medium and grown back to saturation. We find that cells exhibit characteristic dynamics in surface area to volume ratio (SA/V), which are conserved across genetic and chemical perturbations as well as across species and growth temperatures. A mathematical model with a single fitting parameter (the time delay between surface and volume synthesis) is quantitatively consistent with our SA/V experimental observations. The model supports that this time delay is due to differential expression of volume and surface-related genes, and that the first division after dilution occurs at a tightly controlled SA/V. Our minimal model thus provides insight into the connections between bacterial growth rate and cell shape in dynamic environments.

scholarly journals Variability in larval gut pH regulation defines sensitivity to ocean acidification in six species of the Ambulacraria superphylum

2017 ◽  
Vol 284 (1864) ◽  
pp. 20171066 ◽  
Author(s):  
Marian Hu ◽  
Yung-Che Tseng ◽  
Yi-Hsien Su ◽  
Etienne Lein ◽  
Hae-Gyeong Lee ◽  
...  
Keyword(s):  
Ocean Acidification ◽  
Large Scale ◽  
Environmental Changes ◽  
Ph Regulation ◽  
Gastric Ph ◽  
Differential Sensitivity ◽  
Larval Stages ◽  
Regulatory Systems ◽  
Alkaline Conditions ◽  
Gut Ph

The unusual rate and extent of environmental changes due to human activities may exceed the capacity of marine organisms to deal with this phenomenon. The identification of physiological systems that set the tolerance limits and their potential for phenotypic buffering in the most vulnerable ontogenetic stages become increasingly important to make large-scale projections. Here, we demonstrate that the differential sensitivity of non-calcifying Ambulacraria (echinoderms and hemichordates) larvae towards simulated ocean acidification is dictated by the physiology of their digestive systems. Gastric pH regulation upon experimental ocean acidification was compared in six species of the superphylum Ambulacraria. We observed a strong correlation between sensitivity to ocean acidification and the ability to regulate gut pH. Surprisingly, species with tightly regulated gastric pH were more sensitive to ocean acidification. This study provides evidence that strict maintenance of highly alkaline conditions in the larval gut of Ambulacraria early life stages may dictate their sensitivity to decreases in seawater pH. These findings highlight the importance of identifying and understanding pH regulatory systems in marine larval stages that may contribute to substantial energetic challenges under near-future ocean acidification scenarios.

scholarly journals The Protease ClpXP and the PAS Domain Protein DivL Regulate CtrA and Gene Transfer Agent Production inRhodobacter capsulatus

2018 ◽  
Vol 84 (11) ◽  
Author(s):  
Alexander B. Westbye ◽  
Lukas Kater ◽  
Christina Wiesmann ◽  
Hao Ding ◽  
Calvin K. Yip ◽  
...  
Keyword(s):  
Gene Transfer ◽  
Horizontal Gene Transfer ◽  
Rhodobacter Capsulatus ◽  
Caulobacter Crescentus ◽  
Response Regulator ◽  
Pas Domain ◽  
Content Type ◽  
Regulatory Systems ◽  
Gene Transfer Agent ◽  
Domain Protein

ABSTRACTSeveral members of theRhodobacterales(Alphaproteobacteria) produce a conserved horizontal gene transfer vector, called the gene transfer agent (GTA), that appears to have evolved from a bacteriophage. The model system used to study GTA biology is theRhodobacter capsulatusGTA (RcGTA), a small, tailed bacteriophage-like particle produced by a subset of the cells in a culture. The response regulator CtrA is conserved in theAlphaproteobacteriaand is an essential regulator of RcGTA production: it controls the production and maturation of the RcGTA particle and RcGTA release from cells. CtrA also controls the natural transformation-like system required for cells to receive RcGTA-donated DNA. Here, we report that dysregulation of the CckA-ChpT-CtrA phosphorelay either by the loss of the PAS domain protein DivL or by substitution of the autophosphorylation residue of the hybrid histidine kinase CckA decreased CtrA phosphorylation and greatly increased RcGTA protein production inR. capsulatus. We show that the loss of the ClpXP protease or the three C-terminal residues of CtrA results in increased CtrA levels inR. capsulatusand identify ClpX(P) to be essential for the maturation of RcGTA particles. Furthermore, we show that CtrA phosphorylation is important for head spike production. Our results provide novel insight into the regulation of CtrA and GTAs in theRhodobacterales.IMPORTANCEMembers of theRhodobacteralesare abundant in ocean and freshwater environments. The conserved GTA produced by manyRhodobacteralesmay have an important role in horizontal gene transfer (HGT) in aquatic environments and provide a significant contribution to their adaptation. GTA production is controlled by bacterial regulatory systems, including the conserved CckA-ChpT-CtrA phosphorelay; however, several questions about GTA regulation remain. Our identification that a short DivL homologue and ClpXP regulate CtrA inR. capsulatusextends the model of CtrA regulation fromCaulobacter crescentusto a member of theRhodobacterales. We found that the magnitude of RcGTA production greatly depends on DivL and CckA kinase activity, adding yet another layer of regulatory complexity to RcGTA. RcGTA is known to undergo CckA-dependent maturation, and we extend the understanding of this process by showing that the ClpX chaperone is required for formation of tailed, DNA-containing particles.

scholarly journals RegB/RegA, a Highly Conserved Redox-Responding Global Two-Component Regulatory System

2004 ◽  
Vol 68 (2) ◽  
pp. 263-279 ◽  
Author(s):  
Sylvie Elsen ◽  
Lee R. Swem ◽  
Danielle L. Swem ◽  
Carl E. Bauer
Keyword(s):  
Carbon Fixation ◽  
Rhodobacter Capsulatus ◽  
Response Regulator ◽  
Bacterial Species ◽  
Anaerobic Respiration ◽  
Regulatory System ◽  
Redox Active ◽  
Membrane Bound ◽  
Cognate Response Regulator ◽  
Aerobic And Anaerobic

SUMMARY The Reg regulon from Rhodobacter capsulatus and Rhodobacter sphaeroides encodes proteins involved in numerous energy-generating and energy-utilizing processes such as photosynthesis, carbon fixation, nitrogen fixation, hydrogen utilization, aerobic and anaerobic respiration, denitrification, electron transport, and aerotaxis. The redox signal that is detected by the membrane-bound sensor kinase, RegB, appears to originate from the aerobic respiratory chain, given that mutations in cytochrome c oxidase result in constitutive RegB autophosphorylation. Regulation of RegB autophosphorylation also involves a redox-active cysteine that is present in the cytosolic region of RegB. Both phosphorylated and unphosphorylated forms of the cognate response regulator RegA are capable of activating or repressing a variety of genes in the regulon. Highly conserved homologues of RegB and RegA have been found in a wide number of photosynthetic and nonphotosynthetic bacteria, with evidence suggesting that RegB/RegA plays a fundamental role in the transcription of redox-regulated genes in many bacterial species.

scholarly journals Acetate Threshold Concentrations Suggest Varying Energy Requirements during Anaerobic Respiration by Anaeromyxobacter dehalogenans

2004 ◽  
Vol 70 (11) ◽  
pp. 6940-6943 ◽  
Author(s):  
Qiang He ◽  
Robert A. Sanford
Keyword(s):  
Anaerobic Respiration ◽  
Growth Conditions ◽  
Threshold Concentration ◽  
Energy Requirements ◽  
Reducing Conditions ◽  
Single Organism ◽  
Citrate Reduction ◽  
Insight Into

ABSTRACT Acetate threshold concentrations were determined under chlororespiring and Fe(III)-reducing conditions for Anaeromyxobacter dehalogenans strain 2CP-C. The acetate threshold concentrations measured were 69 � 4, 19 � 8, and <1 nM for chlororespiration, amorphous Fe(III) reduction, and Fe(III) citrate reduction, respectively. Residual ΔG values of −75.4 kJ/mol of electrons for chlororespiration and −41.5 kJ/mol of electrons for amorphous Fe(III) reduction were calculated at the acetate threshold concentration. By comparing threshold concentrations for different metabolisms in a single organism, this study provides insight into the metabolic use of energy under different growth conditions.

scholarly journals raiIR Genes Are Part of a Quorum-Sensing Network Controlled by cinI and cinR in Rhizobium leguminosarum

2002 ◽  
Vol 184 (6) ◽  
pp. 1597-1606 ◽  
Author(s):  
F. Wisniewski-Dyé ◽  
J. Jones ◽  
S. R. Chhabra ◽  
J. A. Downie
Keyword(s):  
Quorum Sensing ◽  
Rhizobium Leguminosarum ◽  
Homoserine Lactone ◽  
Major Product ◽  
Homoserine Lactones ◽  
Indigenous Plasmid ◽  
Sensing Systems ◽  
Regulatory Systems ◽  
Normal Expression ◽  
Low Levels

ABSTRACT Analysis of N-acyl-l-homoserine lactones (AHLs) produced by Rhizobium leguminosarum bv. viciae indicated that there may be a network of quorum-sensing regulatory systems producing multiple AHLs in this species. Using a strain lacking a symbiosis plasmid, which carries some of the quorum-sensing genes, we isolated mutations in two genes (raiI and raiR) that are required for production of AHLs. The raiIR genes are located adjacent to dad genes (involved in d-alanine catabolism) on a large indigenous plasmid. RaiR is predicted to be a typical LuxR-type quorum-sensing regulator and is required for raiI expression. The raiR gene was expressed at a low level, possibly from a constitutive promoter, and its expression was increased under the influence of the upstream raiI promoter. Using gene fusions and analysis of AHLs produced, we showed that expression of raiI is strongly reduced in strains carrying mutations in cinI or cinR, genes which determine a higher-level quorum-sensing system that is required for normal expression of raiIR. The product of CinI, N-(3-hydroxy-7-cis tetradecenoyl) homoserine lactone, can induce raiR-dependent raiI expression, although higher levels of expression are induced by other AHLs. Expression of raiI in a strain of Agrobacterium that makes no AHLs resulted in the identification of N-(3-hydroxyoctanoyl)-l-homoserine lactone (3OH,C8-HSL) as the major product of RaiI, although other AHLs that comigrate with N-hexanoyl-, N-heptanoyl-, and N-octanoyl-homoserine lactones were also made at low levels. The raiI gene was strongly induced by 3OH,C8-HSL (the product of RaiI) but could also be induced by other AHLs, suggesting that the raiI promoter can be activated by other quorum-sensing systems within a network of regulation which also involves AHLs determined by genes on the symbiotic plasmid. Thus, the raiIR and cinIR genes are part of a complex regulatory network that influences AHL biosynthesis in R. leguminosarum.

scholarly journals Surface-to-volume scaling and aspect ratio preservation in rod-shaped bacteria

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Nikola Ojkic ◽  
Diana Serbanescu ◽  
Shiladitya Banerjee
Keyword(s):  
Aspect Ratio ◽  
Cell Size ◽  
Bacterial Cell ◽  
Environmental Changes ◽  
Morphological Changes ◽  
Size Control ◽  
Growth Conditions ◽  
Quantitative Agreement ◽  
Quantitative Model ◽  
Bacterial Cells

Rod-shaped bacterial cells can readily adapt their lengths and widths in response to environmental changes. While many recent studies have focused on the mechanisms underlying bacterial cell size control, it remains largely unknown how the coupling between cell length and width results in robust control of rod-like bacterial shapes. In this study we uncover a conserved surface-to-volume scaling relation in Escherichia coli and other rod-shaped bacteria, resulting from the preservation of cell aspect ratio. To explain the mechanistic origin of aspect-ratio control, we propose a quantitative model for the coupling between bacterial cell elongation and the accumulation of an essential division protein, FtsZ. This model reveals a mechanism for why bacterial aspect ratio is independent of cell size and growth conditions, and predicts cell morphological changes in response to nutrient perturbations, antibiotics, MreB or FtsZ depletion, in quantitative agreement with experimental data.

scholarly journals Respiratory control determines respiration and nitrogenase activity of Rhizobium leguminosarum bacteroids.

1996 ◽  
Vol 178 (15) ◽  
pp. 4555-4562 ◽  
Author(s):  
H Haaker ◽  
M Szafran ◽  
H Wassink ◽  
H Klerk ◽  
M Appels
Keyword(s):  
Rhizobium Leguminosarum ◽  
Nitrogenase Activity ◽  
Respiratory Control

scholarly journals HupO, a Novel Regulator Involved in Thiosulfate-Responsive Control of HupSL [NiFe]-Hydrogenase Synthesis in Thiocapsa roseopersicina

2016 ◽  
Vol 82 (7) ◽  
pp. 2039-2049 ◽  
Author(s):  
Ildikó K. Nagy ◽  
Kornél L. Kovács ◽  
Gábor Rákhely ◽  
Gergely Maróti
Keyword(s):  
Transcriptional Repression ◽  
Rhodobacter Capsulatus ◽  
Sulfur Metabolism ◽  
Enzyme Synthesis ◽  
Regulatory Control ◽  
Bacterial Cells ◽  
Purple Sulfur Bacterium ◽  
Content Type ◽  
Thiocapsa Roseopersicina

ABSTRACT[NiFe]-hydrogenases are regulated by various factors to fulfill their physiological functions in bacterial cells. The photosynthetic purple sulfur bacteriumThiocapsa roseopersicinaharbors four functional [NiFe]-hydrogenases: HynSL, HupSL, Hox1, and Hox2. Most of these hydrogenases are functionally linked to sulfur metabolism, and thiosulfate has a central role in this organism. The membrane-associated Hup hydrogenases have been shown to play a role in energy conservation through hydrogen recycling. The expression of Hup-type hydrogenases is regulated by H2inRhodobacter capsulatusandCupriavidus necator; however, it has been shown that the corresponding hydrogen-sensing system is nonfunctional inT. roseopersicinaand that thiosulfate is a regulating factor ofhupexpression. Here, we describe the discovery and analysis of mutants of a putative regulator (HupO) of the Hup hydrogenase inT. roseopersicina. HupO appears to mediate the transcriptional repression of Hup enzyme synthesis under low-thiosulfate conditions. We also demonstrate that the presence of the Hox1 hydrogenase strongly influences Hup enzyme synthesis in thathupexpression was decreased significantly in thehox1mutant. This reduction in Hup synthesis could be reversed by mutation ofhupO, which resulted in strongly elevatedhupexpression, as well as Hup protein levels, and concomitantin vivohydrogen uptake activity in thehox1mutant. However, this regulatory control was observed only at low thiosulfate concentrations. Additionally, weak hydrogen-dependenthupexpression was shown in thehupOmutant strain lacking the Hox1 hydrogenase. HupO-mediated Hup regulation therefore appears to link thiosulfate metabolism and the hydrogenase network inT. roseopersicina.

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