Oxidative protein folding in the mammalian endoplasmic reticulum

2004 ◽  
Vol 32 (5) ◽  
pp. 655-658 ◽  
Author(s):  
C.E. Jessop ◽  
S. Chakravarthi ◽  
R.H. Watkins ◽  
N.J. Bulleid
Keyword(s):  
Endoplasmic Reticulum ◽  
Mammalian Cells ◽  
Redox State ◽  
Structure And Function ◽  
Reduced Form ◽  
Secretory Proteins ◽  
Oxidative Protein Folding ◽  
Disulphide Bonds ◽  
And Function ◽  
Substrate Proteins

Native disulphide bonds are essential for the structure and function of many membrane and secretory proteins. Disulphide bonds are formed, reduced and isomerized in the endoplasmic reticulum of mammalian cells by a family of oxidoreductases, which includes protein disulphide isomerase (PDI), ERp57, ERp72, P5 and PDIR. This review will discuss how these enzymes are maintained in either an oxidized redox state that allows them to form disulphide bonds in substrate proteins or a reduced form that allows them to perform isomerization and reduction reactions, how these opposing pathways may co-exist within the same compartment and why so many oxidoreductases exist when PDI alone can perform all three of these functions.

scholarly journals SRPassing Co-translational Targeting: The Role of the Signal Recognition Particle in Protein Targeting and mRNA Protection

2021 ◽  
Vol 22 (12) ◽  
pp. 6284
Author(s):  
Morgana K. Kellogg ◽  
Sarah C. Miller ◽  
Elena B. Tikhonova ◽  
Andrey L. Karamyshev
Keyword(s):  
Endoplasmic Reticulum ◽  
Noncoding Rna ◽  
Protein Targeting ◽  
Signal Recognition Particle ◽  
Structure And Function ◽  
Secretory Proteins ◽  
Signal Recognition ◽  
Domains Of Life ◽  
And Function

Signal recognition particle (SRP) is an RNA and protein complex that exists in all domains of life. It consists of one protein and one noncoding RNA in some bacteria. It is more complex in eukaryotes and consists of six proteins and one noncoding RNA in mammals. In the eukaryotic cytoplasm, SRP co-translationally targets proteins to the endoplasmic reticulum and prevents misfolding and aggregation of the secretory proteins in the cytoplasm. It was demonstrated recently that SRP also possesses an earlier unknown function, the protection of mRNAs of secretory proteins from degradation. In this review, we analyze the progress in studies of SRPs from different organisms, SRP biogenesis, its structure, and function in protein targeting and mRNA protection.

Some Contributions of Phosphatase and 3,3'-Diaminobenzidine Cytochemistry to Cell Biology

1977 ◽  
Vol 35 ◽  
pp. 420-423
Author(s):  
Alex B. Novikoff
Keyword(s):  
Endoplasmic Reticulum ◽  
Plasma Membrane ◽  
Cell Biology ◽  
Mammalian Cells ◽  
Structure And Function ◽  
Cell Organelles ◽  
Thiamine Pyrophosphatase ◽  
The Status ◽  
Dab Cytochemistry ◽  
And Function

This presentation will highlight cytochemical studies that have illuminated some aspects of structure and function of the endoplasmic reticulum (ER); these have been reviewed recently (1, 2). Phosphatase (Pase) cytochemistry has led to the formulation of new questions regarding secretory mechanisms in a number of endocrine and exocrine cells; it has also made the status of GERL as a distinct organelle considerably firmer. 3,31-diaminobenzidine (DAB) cytochemistry has revealed the presence of an organelle apparently ubiquitous in mammalian cells, the anucleoid peroxisomes(microperoxisomes). DAB cytochemistry has been utilized recently by Gonatas et al. (3) to demonstrate that internalized plasma membrane is transported to GERL.Our initial use of Pase cytochemistry to visualize cell organelles included nucleoside diphosphatase (NDPase), thiamine pyrophosphatase (TPPase), and acid Pase (AcPase). NDPase hydrolyzes the diphosphates of inosine, uridine, and guanosine but not cytidine or adenine diphosphates. Since the work of Yamasaku and Hayaishi (4) we have used TPPase and NDPase interchangeably.

Different redox sensitivity of endoplasmic reticulum associated degradation clients suggests a novel role for disulphide bonds in secretory proteins

2014 ◽  
Vol 92 (2) ◽  
pp. 113-118 ◽  
Author(s):  
Iria Medraño-Fernandez ◽  
Claudio Fagioli ◽  
Alexandre Mezghrani ◽  
Mieko Otsu ◽  
Roberto Sitia
Keyword(s):  
Endoplasmic Reticulum ◽  
Reduced Form ◽  
Secretory Proteins ◽  
Endoplasmic Reticulum Associated Degradation ◽  
Disulphide Bonds ◽  
Complex Process ◽  
Cargo Proteins ◽  
Redox Sensitivity ◽  
Partially Unfolded ◽  
The Stability

To maintain proteostasis in the endoplasmic reticulum (ER), terminally misfolded secretory proteins must be recognized, partially unfolded, and dislocated to the cytosol for proteasomal destruction, in a complex process called ER-associated degradation (ERAD). Dislocation implies reduction of inter-chain disulphide bonds. When in its reduced form, protein disulphide isomerase (PDI) can act not only as a reductase but also as an unfoldase, preparing substrates for dislocation. PDI oxidation by Ero1 favours substrate release and transport across the ER membrane. Here we addressed the redox dependency of ERAD and found that DTT stimulates the dislocation of proteins with DTT-resistant disulphide bonds (i.e., orphan Ig-μ chains) but stabilizes a ribophorin mutant (Ri332) devoid of them. DTT promotes the association of Ri332, but not of Ig-µ, with PDI. This discrepancy may suggest that disulphide bonds in cargo proteins can be utilized to oxidize PDI, hence facilitating substrate detachment and degradation also in the absence of Ero1. Accordingly, Ero1 silencing retards Ri332 degradation, but has little if any effect on Ig-µ. Thus, some disulphides can increase the stability and simultaneously favour quality control of secretory proteins.

scholarly journals Establishment of a system for monitoring endoplasmic reticulum redox state in mammalian cells

2013 ◽  
Vol 93 (11) ◽  
pp. 1254-1258 ◽  
Author(s):  
Kohsuke Kanekura ◽  
Shinsuke Ishigaki ◽  
Philip I Merksamer ◽  
Feroz R Papa ◽  
Fumihiko Urano
Keyword(s):  
Endoplasmic Reticulum ◽  
Mammalian Cells ◽  
Redox State

Expanding the genetic code of mammalian cells

2017 ◽  
Vol 45 (2) ◽  
pp. 555-562 ◽  
Author(s):  
James S. Italia ◽  
Yunan Zheng ◽  
Rachel E. Kelemen ◽  
Sarah B. Erickson ◽  
Partha S. Addy ◽  
...  
Keyword(s):  
Protein Structure ◽  
Amino Acid ◽  
Mammalian Cells ◽  
Living Cells ◽  
Structure And Function ◽  
Unnatural Amino Acid ◽  
Full Potential ◽  
Recent Developments ◽  
Small Footprint ◽  
And Function

In the last two decades, unnatural amino acid (UAA) mutagenesis has emerged as a powerful new method to probe and engineer protein structure and function. This technology enables precise incorporation of a rapidly expanding repertoire of UAAs into predefined sites of a target protein expressed in living cells. Owing to the small footprint of these genetically encoded UAAs and the large variety of enabling functionalities they offer, this technology has tremendous potential for deciphering the delicate and complex biology of the mammalian cells. Over the last few years, exciting progress has been made toward expanding the toolbox of genetically encoded UAAs in mammalian cells, improving the efficiency of their incorporation and developing innovative applications. Here, we provide our perspective on these recent developments and highlight the current challenges that must be overcome to realize the full potential of this technology.

scholarly journals A toolbox of nanobodies developed and validated for diverse neuroscience research applications

2019 ◽  
Author(s):  
Jie-Xian Dong ◽  
Yongam Lee ◽  
Michael Kirmiz ◽  
Stephanie Palacio ◽  
Camelia Dumitras ◽  
...  
Keyword(s):  
Biomedical Research ◽  
Mammalian Cells ◽  
Structure And Function ◽  
Mammalian Brain ◽  
Tissue Penetration ◽  
Brain Neurons ◽  
Neuroscience Research ◽  
Form Part ◽  
Specific Proteins ◽  
And Function

SUMMARYNanobodies (nAbs) are small, minimal antibodies that have distinct attributes that make them uniquely suited for certain biomedical research, diagnostic and therapeutic applications. Prominent uses include as intracellular antibodies or intrabodies to bind and deliver cargo to specific proteins and/or subcellular sites within cells, and as nanoscale immunolabels for enhanced tissue penetration and improved spatial imaging resolution. Here, we report the generation and validation of nAbs against a set of proteins prominently expressed at specific subcellular sites in brain neurons. We describe a novel hierarchical validation pipeline to systematically evaluate nAbs isolated by phage display for effective and specific use as intrabodies and immunolabels in mammalian cells including brain neurons. These nAbs form part of a robust toolbox for targeting proteins with distinct and highly spatially-restricted subcellular localization in mammalian brain neurons, allowing for visualization and/or modulation of structure and function at those sites.

Alleviation of Hippocampal Endoplasmic Reticulum Stress by Allomyrina dichotoma Larvae Extract

2018 ◽  
Vol 46 (03) ◽  
pp. 633-650 ◽  
Author(s):  
Jongwan Kim ◽  
Md. Nazmul Haque ◽  
Tae-Won Goo ◽  
Il Soo Moon
Keyword(s):  
Endoplasmic Reticulum ◽  
Er Stress ◽  
Hippocampal Neurons ◽  
Ethanol Extract ◽  
Structure And Function ◽  
Synaptic Proteins ◽  
Obese Mice ◽  
Neuron Culture ◽  
Hippocampal Cultures ◽  
And Function

In the brain, endoplasmic reticulum (ER) stress results in synaptic dysfunction and eventually leads to neurodegeneration. Allomyrina dichotoma larvae are a Chinese ethnomedicine and are widely used in East Asia. In the present study, we investigated the ability of ethanol extract of A. dichotoma larvae (ADE) to improve synaptic structure and function by activating unfolded protein response (UPR) under ER stress in animal and neuron culture models. ER stress was induced in obese mice fed a high fat diet (HFD) or by treating dissociated cultures of rat embryonic (E19) hippocampal neurons with tunicamycin (TM). Western blot and real-time or conventional RT-PCR were performed to analyze the expressions of ER stress marker proteins. In dissociated hippocampal cultures, immunocytochemistry was performed for synaptic proteins, and cultures were stained with styryl dye FM1-43 to assess presynaptic activities. In HFD-fed obese mice, ADE efficiently reduced the expressions of ER stress markers, such as, xbp-1, chop, atf4, erdi4, and eIf2a, and those of the ER chaperone/foldases Bip/grp78, Ero-1l, and PDI. Unconventionally spliced xbp-1s mRNA was not detected. In primary rat hippocampal cultures under ER stress, ADE significantly lowered the nuclear expression of CHOP, inhibited the downregulations of postsynaptic proteins, such as, GluN2A, GluN2B, and PSD-95, and maintained the pool size of recycling presynaptic vesicles. The study shows that ADE potently suppressed the induction of ER stress and maintained the structure and function of hippocampal neurons, and suggests that ADE is a potentially valuable food supplement and preventive therapeutic for ER stress-related nervous disorders.

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