scholarly journals Rat mammary-gland transferrin: nucleotide sequence, phylogenetic analysis and glycan structure

1995 ◽  
Vol 308 (3) ◽  
pp. 1040-1040 ◽  
Keyword(s):  
Phylogenetic Analysis ◽  
Mammary Gland ◽  
Nucleotide Sequence ◽  
Glycan Structure ◽  
Rat Mammary Gland

scholarly journals Rat mammary-gland transferrin: nucleotide sequence, phylogenetic analysis and glycan structure

1995 ◽  
Vol 307 (1) ◽  
pp. 47-55 ◽  
Author(s):  
H Escrivá ◽  
A Pierce ◽  
B Coddeville ◽  
F González ◽  
M Benaissa ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Mammary Gland ◽  
Sialic Acid ◽  
Amino Acid ◽  
Signal Sequence ◽  
Glycosylation Site ◽  
Glycan Structure ◽  
Sialic Acid Content ◽  
Native Page ◽  
Rat Mammary Gland

The complete cDNA for rat mammary-gland transferrin (Tf) has been sequenced and also the native protein isolated from milk in order to analyse the structure of the main glycan variants present. A lactating-rat mammary-gland cDNA library in lambda gt10 was screened with a partial cDNA copy of rat liver Tf and subsequently rescreened with 5′ fragments of the longest clones. This produced a 2275 bp insert coding for an open reading frame of 695 amino acid residues. This includes a 19-amino acid signal sequence and the mature protein containing 676 amino acids and one N-glycosylation site in the C-terminal domain at residue 490. Phylogenetic analysis was carried out using 14 translated Tf nucleotide sequences, and the derived evolutionary tree shows that at least three gene duplication events have occurred during Tf evolution, one of which generated the N- and C-terminal domains and occurred before separation of arthropods and chordates. The two halves of human melanotransferrin are more similar to each other than to any other sequence, which contrasts with the pattern shown by the remaining sequences. Native rat milk Tf is separated into four bands on native PAGE that differ only in their sialic acid content: one biantennary glycan is present containing either no sialic acid residues or up to three. The complete structures of the two major variants were determined by methylation, m.s. and 400 MHz 1H-n.m.r. spectroscopy. They contain either one or two neuraminic acid residues (alpha 2-->6)-linked to galactose in conventional biantennary N-acetyl-lactosamine-type glycans. Most contain fucose (alpha 1-->6)-linked to the terminal non-reducing N-acetylglucosamine.

Nucleotide sequence and phylogenetic analysis of the medium (M) genomic RNA segments of three hantaviruses isolated in China

1998 ◽  
Vol 56 (1) ◽  
pp. 69-76 ◽  
Author(s):  
Xiaohong Shi ◽  
Mifang Liang ◽  
Changshou Hang ◽  
Gan Song ◽  
Conall McCaughey ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Nucleotide Sequence ◽  
Genomic Rna

scholarly journals Identification and Sequence Analysis of a Novel Ilarvirus Infecting Sweet Cherry

Plants ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 514
Author(s):  
Chrysoula G. Orfanidou ◽  
Fei Xing ◽  
Jun Zhou ◽  
Shifang Li ◽  
Nikolaos I. Katis ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Nucleotide Sequence ◽  
Sanger Sequencing ◽  
Sweet Cherry ◽  
Novel Species ◽  
Peach Tree ◽  
Sweet Cherries ◽  
Blastn Analysis ◽  
Fruit Orchards ◽  
Prunus Spp

In the present study, we utilized high throughput and Sanger sequencing to determine the complete nucleotide sequence of a putative new ilarvirus species infecting sweet cherry, tentatively named prunus virus I (PrVI). The genome of PrVI is comprised of three RNA segments of 3474 nt (RNA1), 2911 nt (RNA2), and 2231 nt (RNA3) and features conserved motifs representative of the genus Ilarvirus. BlastN analysis revealed 68.1–71.9% nt identity of PrVI with strawberry necrotic shock virus (SNSV). In subsequent phylogenetic analysis, PrVI was grouped together with SNSV and blackberry chlorotic ringspot virus (BCRV), both members of subgroup 1 of ilarviruses. In addition, mini-scale surveys in stone fruit orchards revealed the presence of PrVI in a limited number of sweet cherries and in one peach tree. Overall, our data suggest that PrVI is a novel species of the genus Ilarvirus and it consists the fifth member of the genus that is currently known to infect Prunus spp.

Sign in / Sign up

Export Citation Format

Share Document