scholarly journals Effect of specificity on ligand conformation in acyl-chymotrypsins

1994 ◽  
Vol 297 (2) ◽  
pp. 281-287 ◽  
Author(s):  
S S Johal ◽  
A J White ◽  
C W Wharton

I.r. difference spectroscopy combined with 13C and 18O double-isotope substitution was used to examine the ester acyl carbonyl stretching vibration of hydrocinnamoyl-chymotrypsin. A single acyl carbonyl stretching band was observed at 1731 cm-1. This contrasts with previous i.r. and resonance Raman spectroscopic studies of a number of trans-3-arylacryloyl-chymotrypsins which showed two acyl carbonyl stretching bands in the region of 1700 cm-1, which were proposed to represent productive and non-productive conformations of the acyl-enzyme. The single acyl carbonyl band for hydrocinnamoyl-chymotrypsin suggests only a single conformation, and the comparatively high frequency of this band implies little or no hydrogen-bonding to this carbonyl group. Enzymic hydrogen-bonding to the acyl carbonyl is believed to give bond polarization and thereby catalytic-rate acceleration. Thus, in view of the apparent lack of such hydrogen-bonding in hydrocinnamoyl-chymotrypsin, it should be the case that this acyl-chymotrypsin is less specific than trans-3-arylacryloyl-chymotrypsins, whereas the opposite is true. It is therefore proposed that there may be a productive acyl carbonyl population of lower stretching frequency for hydrocinnamoyl-chymotrypsin, but that this is too small to be discerned because of either a relatively high deacylation rate or an unfavourable conformational equilibrium. The single acyl carbonyl band for hydrocinnamoyl-chymotrypsin is significantly broader than those for trans-3-arylacryloyl-chymotrypsins, indicating that this group is more conformationally mobile and dispersed in the former. This can be correlated with the absence of acyl carbonyl hydrogen-bonding in hydrocinnamoyl-chymotrypsin, and with the much greater flexibility of the saturated hydrocinnamoyl group than unsaturated trans-3-arylacryloyl. This flexibility is presumably the reason why hydrocinnamoyl-chymotrypsin is more specific than trans-3-arylacryloyl-chymotrypsins. Resonance Raman spectroscopy is limited to the non-specific trans-3-arylacryloyl-chymotrypsins because of its chromophoric requirement, whereas i.r. may be used to examine non-chromophoric more specific acyl-enzymes such as hydrocinnamoyl-chymotrypsin. The results presented in this paper suggest that trans-3-arylacryloyl-chymotrypsins are atypical.

1978 ◽  
Vol 175 (2) ◽  
pp. 727-735 ◽  
Author(s):  
K Kumar ◽  
D J Phelps ◽  
P R Carey ◽  
N M Young

The binding of four dinitrophenyl haptens to the mouse myeloma proteins MOPC 315 IgA (immunoglobulin A) and MOPC 460IgA was studied by resonance Raman spectroscopy. Isotopic substitution with 15N and 2H was used to assign features in the resonance Raman spectra of the free haptens. Changes in each of these features on binding to the proteins could then be attributed to interactions of the proteins' binding sites with either the p-NO2 or the o-NO2/amine regions of the haptens. The interactions between a given hapten and MOPC 315 IgA are often quite distinct from those between the same hapten and MOPC 460 IgA. Moreover, for both antibodies the nature of the R side chain in a Dnp-NHR (Dnp, 2,4-dinitrophenyl) compound appears to modify the interactions between the Dnp chromophore and the protein. Thus, with the haptens studied, there is no unique set of contacts between the Dnp group and the binding site. The contacts expected between epsilon-2,4-dinitrophenyl-L-lysine and the site on MOPC 315 IgA, on the basis of a recent model for this site [Dwek, Wain-Hobson, Dower, Gettins, Sutton, Perkins & Givol (1977) Nature (London) 266, 31–37] were not detected. However, the contacts between this hapten and the site on MOPC 460 IgA were closer to those predicted by the model for MOPC 315 IgA.


Holzforschung ◽  
2008 ◽  
Vol 62 (2) ◽  
pp. 183-188 ◽  
Author(s):  
Krishna K. Pandey ◽  
Tapani Vuorinen

Abstract The effect of laser irradiation (Ar+ ion laser, 244 nm) on photodegradation of lignin in silver birch and rubberwood as hardwoods and spruce and chir pine as softwoods has been investigated by UV resonance Raman spectroscopy (UVRRS). UVRR spectra showed degradation of aromatic structures accompanied by the formation of both ortho- and para-quinone structures as a result of photodegradation of wood surfaces. There was a rapid decrease in the intensities of all the lignin-associated bands accompanied by broadening of aromatic bands at 1602 cm-1 and in the region of 1500–1000 cm-1 due to formation of unsaturated structures arisen from lignin degradation. The rate of lignin degradation was observed by measuring the relative intensity of aromatic band at 1602 cm-1 during photodegradation. The rates of UV-degradation of hardwood and softwood surfaces were compared and it was found that hardwoods degrade at a faster rate than softwoods. The syringyl structures in hardwood lignin are more sensitive to photochemical degradation than guaiacyl structures. The rate of photodegradation increased with increasing intensity of the irradiated laser energy.


ChemSusChem ◽  
2016 ◽  
Vol 10 (3) ◽  
pp. 551-561 ◽  
Author(s):  
Anke Keidel ◽  
Isidoro López ◽  
Jana Staffa ◽  
Uwe Kuhlmann ◽  
Fernando Bozoglian ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document