scholarly journals The catalytic consequences of experimental evolution. Transition-state structure during catalysis by the evolved β-galactosidases of Escherichia coli (ebg enzymes) changed by a single mutational event

1989 ◽  
Vol 260 (1) ◽  
pp. 109-114 ◽  
Author(s):  
B F L Li ◽  
D Holdup ◽  
C A J Morton ◽  
M L Sinnott
Keyword(s):  
Transition State ◽  
Isotope Effects ◽  
Kinetic Isotope Effects ◽  
Mutational Event ◽  
Kinetic Isotope ◽  
Steady State Kinetic ◽  
Leaving Group ◽  
Enzyme Intermediates ◽  
Sugar Ring ◽  
Hydrolysis Of

1. The first chemical step in the hydrolysis of galactosylpyridinium ions by the evolvant ebg enzyme is less sensitive to leaving-group acidity than in the case of the wild-type ebg enzyme, implying less glycone-aglycone-bond fission at the transition state. 2. The first chemical step in the hydrolysis of aryl galactosides by ebg enzyme is probably less sensitive to leaving-group acidity than in the case of ebg enzyme, possibly as a consequence of resulting in more effective proton donation to the leaving aglycone. 3. alpha-Deuterium kinetic isotope effects of 1.1(0) and beta-deuterium kinetic isotope effects of 1.0(0) were measured for the hydrolysis of galactosyl-enzyme intermediates derived from ebg and ebg enzymes: these effects are not compatible with reaction of the sugar ring through a 4C1-like conformation, or with an ionic glycosyl-enzyme intermediate. 4. The variation with pH of steady-state kinetic parameters for hydrolysis of p-nitrophenyl galactoside by ebg and ebg enzymes and of 3-methylphenyl beta-galactoside, 3,4-dinitrophenyl beta-galactoside and beta-galactosyl-3-bromopyridinium ion by ebg enzyme was measured. The steep, non-classical, fall in activity against p-nitrophenyl galactoside at low pH observed with ebg and ebg enzymes is not observed with ebg enzymes.

Transition-state structure for the hydronium-ion-promoted hydrolysis of α-d-glucopyranosyl fluoride

2015 ◽  
Vol 93 (4) ◽  
pp. 463-467 ◽  
Author(s):  
Jefferson Chan ◽  
Ariel Tang ◽  
Andrew J. Bennet
Keyword(s):  
Transition State ◽  
Kinetic Isotope Effect ◽  
Bond Cleavage ◽  
Isotope Effects ◽  
Kinetic Isotope Effects ◽  
Theoretical Modelling ◽  
Kinetic Isotope ◽  
Hydronium Ion ◽  
Anomeric Carbon ◽  
Hydrolysis Of

The transition state for the hydronium-ion-promoted hydrolysis of α-d-glucopyranosyl fluoride in water has been characterized by combining multiple kinetic isotope effect measurements with theoretical modelling. The measured kinetic isotope effects for the C1-deuterium, C2-deuterium, C5-deuterium, anomeric carbon-13, and ring oxygen-18 are 1.219 ± 0.021, 1.099 ± 0.024, 0.976 ± 0.014, 1.014 ± 0.005, and 0.991 ± 0.013, respectively. The transition state for the hydronium ion reaction is late with respect to both C–F bond cleavage and proton transfer.

Isotope Effect Studies on Elimination Reactions. IX. The Nature of the Transition State for the E2 Reaction of 2-Arylethylammonium Ions with Ethoxide in Ethanol

1974 ◽  
Vol 52 (5) ◽  
pp. 749-760 ◽  
Author(s):  
P. J. Smith ◽  
A. N. Bourns
Keyword(s):  
Transition State ◽  
Isotope Effect ◽  
Isotope Effects ◽  
Nitrogen Isotope ◽  
Kinetic Isotope Effects ◽  
Ammonium Ions ◽  
Nitrogen Effect ◽  
Kinetic Isotope ◽  
Leaving Group ◽  
Hydrogen Deuterium

Kinetic isotope effects have been determined for the E2 reaction of some 2-arylethyltrimethyl-ammonium ions with ethoxide in ethanol at 40°. The nitrogen effect, (k14/k15 − 1)100, decreased with increasing electron-withdrawing ability of the para substituent; i.e. 1.37, 1.33, 1.14, and 0.88 for p-OCH3, p-H, p-Cl, and p-CF3, respectively. Furthermore, the primary hydrogen–deuterium isotope effects increased for the same substituents, respectively; i.e. kH/kD = 2.64, 3.23, 3.48, and 4.16. A large positive ρ value of 3.66 was found as well as a small secondary α-deuterium effect of 1.02 for p-H. In addition, the nitrogen isotope effect decreased with increasing strength of the abstracting base for the reaction of ethyltrimethylammonium ion; i.e. 1.86 and 1.41 at 60° for reaction with EtO−–EtOH and t-BuO−–t-BuOH, respectively. The results are discussed in terms of recent theoretical treatments of the effect of base, substituents, and nature of the leaving group on the nature of the transition state for an E2 process. The conclusion is reached that any structural change which causes one bond (C—H) to be weakened more at the transition state will have a corresponding effect on the other bond [Formula: see text]

Isotope effects in nucleophilic substitution reactions. III. The effect of changing the leaving group on transition state structure in SN2 reactions

1979 ◽  
Vol 57 (11) ◽  
pp. 1354-1367 ◽  
Author(s):  
Kenneth Charles Westaway ◽  
Syed Fasahat Ali
Keyword(s):  
Transition State ◽  
Nucleophilic Substitution ◽  
Isotope Effects ◽  
Heavy Atom ◽  
Substituent Effects ◽  
Kinetic Isotope Effects ◽  
Substitution Reactions ◽  
Nucleophilic Substitution Reactions ◽  
Kinetic Isotope ◽  
Leaving Group

The nucleophilic substitution reactions of a series of 4-substituted phenylbenzyldimethyl-ammonium ions with thiophenoxide ions at 0 °C in N,N-dimethylformamide have been used to demonstrate how a change in the leaving group alters the structure of the SN2 transition state. Heavy atom (nitrogen) kinetic isotope effects, secondary α-deuterium kinetic isotope effects and Hammett ρ values provide qualitative descriptions of both the nucleophile–α-carbon and α-carbon–leaving group bonds in the transition states of these reactions. The results indicate that changing to a better leaving group causes the bond between the α-carbon and the nucleophile to be much more fully formed while the bond to the leaving group is essentially unchanged. The results are discussed in the light of current theories of substituent effects on SN2 reactions and a possible explanation for the surprising results (i) that the greatest effect is in the bond more remote from the point of structural change and (ii) that more nucleophilic assistance is required to displace a better leaving group is given.

Isotope effects in nucleophilic substitution reactions. IX. The effect of bond strength on substituent effects on the structure of SN2 transition states

1993 ◽  
Vol 71 (12) ◽  
pp. 2084-2094 ◽  
Author(s):  
Kenneth Charles Westaway
Keyword(s):  
Bond Strength ◽  
Transition State ◽  
Isotope Effects ◽  
Transition States ◽  
Substituent Effects ◽  
Kinetic Isotope Effects ◽  
Substitution Reactions ◽  
Kinetic Isotope ◽  
Leaving Group ◽  
Made In

The effects of substituents on the structure of SN2 transition states suggested by kinetic isotope effects and Hammett ρ values are often different and, moreover, often do not agree with substituent effects predicted by current theories whether the change in substituent is made in the nucleophile, in the leaving group, or at the α-carbon. The importance of the strength of the reacting bonds in determining the effects of substituents on transition-state structure is investigated. A bond strength hypothesis that suggests there will be a significant change in the weaker reacting bond but little or no change in the stronger reacting bond in an SN2 transition state when a substituent in the nucleophile, the substrate, or the leaving group is altered in an SN2 reaction, predicts a high percentage of the experimental results.

The Importance of Anharmonicity of The Vibrational Excited States in Chemical Kinetics

1975 ◽  
Vol 53 (20) ◽  
pp. 3069-3074 ◽  
Author(s):  
Jan Bron
Keyword(s):  
Transition State ◽  
Excited States ◽  
Isotope Effects ◽  
Kinetic Isotope Effects ◽  
Vibrational States ◽  
Vibrational Anharmonicity ◽  
Kinetic Isotope ◽  
Large Correction ◽  
Lower Temperature ◽  
Lower Temperature Region

The corrections to rate constants for an harmonicity of vibrational excited states have been evaluated over the temperature range of 200–1100 K. The reaction O2 + X, where X is H or D, has been chosen as the model system. Only the influence of vibrational anharmonicity of the triatomic transition state has been determined. Two geometric shapes for the transition state, bent and isosceles configurations, have been investigated in detail by the bond order method.It is found that the correction can be large, depending upon the geometry and force field of the transition state and the temperature. The magnitude of the correction for anharmonicity of the vibrational excited states depends mainly, at a particular temperature, on the strength of the O—X bond in the transition state. In the case of a large correction, anharmonicity may lead to a nonlinear Arrhenius plot.Because of cancellation effects, the correction for anharmonicity of the excited vibrational states in kinetic isotope effects can be ignored in the lower temperature region. It has also been found that anharmonicity of the vibrational groundstate can explain unexpected large isotope effects.

Kinetics and Mechanism of the Aminolysis of S-Aryl O-Ethyl Dithiocarbonates in Acetonitrile

2004 ◽  
Vol 69 (12) ◽  
pp. 2174-2182 ◽  
Author(s):  
Hyuck Keun Oh ◽  
Ji Young Oh ◽  
Dae Dong Sung ◽  
Ikchoon Lee
Keyword(s):  
Transition State ◽  
Isotope Effects ◽  
Kinetic Isotope Effects ◽  
Interaction Constant ◽  
Kinetics And Mechanism ◽  
Cyclic Structure ◽  
Concerted Mechanism ◽  
Tetrahedral Intermediate ◽  
Kinetic Isotope ◽  
Hydrogen Bonded

The aminolysis of S-aryl O-ethyl dithiocarbonates with benzylamines are studied in acetonitrile at -25.0 °C. The βX (βnuc) values are in the range 0.67-0.77 with a negative cross-interaction constant, ρXZ = -0.24, which are interpreted to indicate a concerted mechanism. The kinetic isotope effects involving deuterated benzylamine nucleophiles (XC6H4CH2ND2) are large, kH/kD = 1.41-1.97, suggesting that the N-H(D) bond is partially broken in the transition state by forming a hydrogen-bonded four-center cyclic structure. The concerted mechanism is enforced by the strong push provided by the EtO group which enhances the nucleofugalities of both benzylamine and arenethiolate from the putative zwitterionic tetrahedral intermediate.

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