Symbiosomes: temporary moonlighting organelles

2014 ◽  
Vol 460 (1) ◽  
pp. 1-11 ◽  
Author(s):  
David W. Emerich ◽  
Hari B. Krishnan

Symbiosomes are a unique structural entity that performs the role of biological nitrogen fixation, an energy-demanding process that is the primary entryway of fixed nitrogen into the biosphere. Symbiosomes result from the infection of specific rhizobial strains into the roots of an appropriate leguminous host plant forming an organ referred to as a nodule. Within the infected plant cells of the nodule, the rhizobia are encased within membrane-bounded structures that develop into symbiosomes. Mature symbiosomes create an environment that allows the rhizobia to differentiate into a nitrogen-fixing form called bacteroids. The bacteroids are surrounded by the symbiosome space, which is populated by proteins from both eukaryotic and prokaryotic symbionts, suggesting this space is the quintessential component of symbiosis: an inter-kingdom environment with the single purpose of symbiotic nitrogen fixation. Proteins associated with the symbiosome membrane are largely plant-derived proteins and are non-metabolic in nature. The proteins of the symbiosome space are mostly derived from the bacteroid with annotated functions of carbon metabolism, whereas relatively few are involved in nitrogen metabolism. An appreciable portion of both the eukaryotic and prokaryotic proteins in the symbiosome are also ‘moonlighting’ proteins, which are defined as proteins that perform roles unrelated to their annotated activities when found in an unexpected physiological environment. The essential functions of symbiotic nitrogen fixation of the symbiosome are performed by co-operative interactions of proteins from both symbionts some of which may be performing unexpected roles.

2016 ◽  
Vol 82 (13) ◽  
pp. 3698-3710 ◽  
Author(s):  
Florence Mus ◽  
Matthew B. Crook ◽  
Kevin Garcia ◽  
Amaya Garcia Costas ◽  
Barney A. Geddes ◽  
...  

ABSTRACTAccess to fixed or available forms of nitrogen limits the productivity of crop plants and thus food production. Nitrogenous fertilizer production currently represents a significant expense for the efficient growth of various crops in the developed world. There are significant potential gains to be had from reducing dependence on nitrogenous fertilizers in agriculture in the developed world and in developing countries, and there is significant interest in research on biological nitrogen fixation and prospects for increasing its importance in an agricultural setting. Biological nitrogen fixation is the conversion of atmospheric N2to NH3, a form that can be used by plants. However, the process is restricted to bacteria and archaea and does not occur in eukaryotes. Symbiotic nitrogen fixation is part of a mutualistic relationship in which plants provide a niche and fixed carbon to bacteria in exchange for fixed nitrogen. This process is restricted mainly to legumes in agricultural systems, and there is considerable interest in exploring whether similar symbioses can be developed in nonlegumes, which produce the bulk of human food. We are at a juncture at which the fundamental understanding of biological nitrogen fixation has matured to a level that we can think about engineering symbiotic relationships using synthetic biology approaches. This minireview highlights the fundamental advances in our understanding of biological nitrogen fixation in the context of a blueprint for expanding symbiotic nitrogen fixation to a greater diversity of crop plants through synthetic biology.


Author(s):  
João W. Bossolani ◽  
Nadia M. Poloni ◽  
Edson Lazarini ◽  
João V. T. Bettiol ◽  
João A. Fischer Filho ◽  
...  

ABSTRACT Soybean has traditionally been produced in systems that include the use of herbicides, often in higher than recommended doses. The process of symbiotic nitrogen fixation in legumes can be hampered by these herbicides, both by direct effects on rhizobia and indirect effects on the host plant. An outdoor experiment was performed to evaluate the effects of different doses of a glyphosate herbicide on Bradyrhizobium strains and biological nitrogen fixation in soybean BMX Potência RR plants. Soybean seeds were inoculated with Bradyrhizobium elkanii (SEMIA 5019) and Bradyrhizobium japonicum (SEMIA 5079) strains in a commercial liquid inoculant. The treatments consisted of the absence and presence of Bradyrhizobium genotypes inoculated via seed and four doses of the herbicide glyphosate applied on the leaves (0, 1.0, 2.0, and 4.0 L ha-1 of the commercial product) at the V3 stage. The leaf chlorophyll index of inoculated RR soybean plants did not change on the application of glyphosate and, regardless of inoculation, plants had the capacity to recover from the effects of glyphosate application, without impaired development.


2020 ◽  
Vol 21 (16) ◽  
pp. 5926
Author(s):  
Wei Dong ◽  
Yuguang Song

Nitrogen is essential for the growth of plants. The ability of some plant species to obtain all or part of their requirement for nitrogen by interacting with microbial symbionts has conferred a major competitive advantage over those plants unable to do so. The function of certain flavonoids (a group of secondary metabolites produced by the plant phenylpropanoid pathway) within the process of biological nitrogen fixation carried out by Rhizobium spp. has been thoroughly researched. However, their significance to biological nitrogen fixation carried out during the actinorhizal and arbuscular mycorrhiza–Rhizobium–legume interaction remains unclear. This review catalogs and contextualizes the role of flavonoids in the three major types of root endosymbiosis responsible for biological nitrogen fixation. The importance of gaining an understanding of the molecular basis of endosymbiosis signaling, as well as the potential of and challenges facing modifying flavonoids either quantitatively and/or qualitatively are discussed, along with proposed strategies for both optimizing the process of nodulation and widening the plant species base, which can support nodulation.


2013 ◽  
Vol 59 ◽  
pp. 33-58
Author(s):  
John Brockwell ◽  
Janet I. Sprent ◽  
David A. Day

Fraser Bergersen rose from humble beginnings in New Zealand to become a leading microbiologist who specialized in the physiology and biochemistry of legume nitrogen fixation. He and his family emigrated to Australia in 1954. Virtually all of his career was spent in Canberra at the Commonwealth Scientific and Industrial Research Organisation (CSIRO) Division of Plant Industry. In the 1970s, Bergersen and colleagues achieved worldwide prominence when they elucidated the role of leghaemoglobin in facilitating oxygen diffusion to the Bradyrhizobium bacteroids in soybean nodules and in the nitrogen fixation process itself. During the rest of his working life, Fraser Bergersen contributed greatly to understanding the role of oxygen, the mode of its delivery, and terminal oxidases in all forms of biological nitrogen fixation.


1988 ◽  
Vol 66 (7) ◽  
pp. 1241-1247 ◽  
Author(s):  
A. M. Domenach ◽  
F. Kurdali ◽  
C. Danière ◽  
R. Bardin

To use the 15N natural abundance method to evaluate the symbiotic nitrogen fixation by actinorhizal trees, it is necessary to determine the isotopic identity of assimilated nitrogen from two sources: the soil and the air. This study reports an isotopic value of fixed nitrogen by two alder species (Alnus incana (L.) Moench and Alnus glutinosa (L.) Gaertn. growing on nitrogen-free medium in greenhouse experiments. The δ15N value of the aerial parts was −2. This value was stable with time and did not depend on the Frankia strains used. This value could be used to estimate the nitrogen fixation in the natural ecosystem. Other parameters such as the mobilization of nitrogen reserves and the choice of the reference plant must be investigated to apply this method. The nodules of these two alder species were enriched in 15N relative to the rest of the plant but there was no relationship between symbiotic effectiveness of Frankia strains and 15N enrichment of nodules. On the other hand, for naturally growing trees, an enrichment in 15N was found primarily in the vesicles of nodules that are the sites of nitrogen fixation.


2016 ◽  
Vol 49 (1) ◽  
pp. 17-29 ◽  
Author(s):  
Wansik Shin ◽  
Rashedul Islam ◽  
Abitha Benson ◽  
Manoharan Melvin Joe ◽  
Kiyoon Kim ◽  
...  

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