scholarly journals The binding of oxidized coenzymes by glutamate dehydrogenase and the effects of glutarate and purine nucleotides

1972 ◽  
Vol 126 (4) ◽  
pp. 975-984 ◽  
Author(s):  
K. Dalziel ◽  
R. R. Egan
Keyword(s):  
Glutamate Dehydrogenase ◽  
Dissociation Constants ◽  
Equilibrium Dialysis ◽  
Kinetic Studies ◽  
Binding Studies ◽  
Purine Nucleotides ◽  
Active Centre ◽  
Sodium Phosphate Buffer ◽  
Low Concentrations ◽  
High Concentrations

1. The binding of NAD+ and NADP+ to glutamate dehydrogenase has been studied in sodium phosphate buffer, pH7.0, by equilibrium dialysis. Approximate values for the dissociation constants are 0.47 and 2.5mm respectively. For NAD+ the value agrees with that estimated from initial-rate results. 2. In the presence of the substrate analogue glutarate both coenzymes are bound more firmly, and there is one active centre per enzyme subunit. The binding results cannot be described in terms of independent and identical active centres, and binding is stronger at low coenzyme concentrations than at high concentrations. Either the six subunits of the oligomer are not identical or there are negative interactions between them in the binding of coenzymes in ternary complexes with glutarate. The latter explanation is favoured. 3. The binding studies support the conclusions drawn from earlier kinetic studies of the glutamate reaction. 4. ADP and GTP respectively decrease and increase the affinity of the enzyme for NAD+ and NADP+, in both the presence and absence of glutarate. The negative binding interactions in the presence of glutarate are abolished by ADP, which decreases the affinity for the coenzymes at low concentrations of the latter. 5. In the presence of glutarate, GTP and NAD+ or NADP+, the association of enzyme oligomers is prevented, and the solubility of the enzyme is decreased; the complex of enzyme and ligands readily crystallizes. 6. The results are discussed in relation to earlier kinetic studies.

scholarly journals Kinetic studies of glutamate dehydrogenase. The reductive amination of 2-oxoglutarate

1970 ◽  
Vol 118 (3) ◽  
pp. 409-419 ◽  
Author(s):  
P. C. Engel ◽  
K. Dalziel
Keyword(s):  
Glutamate Dehydrogenase ◽  
Reductive Amination ◽  
Initial Rate ◽  
Dissociation Constants ◽  
Kinetic Studies ◽  
Random Order ◽  
Order Type ◽  
Reverse Reaction ◽  
Enzyme Subunits ◽  
High Concentrations

1. Kinetic studies of the reductive amination of 2-oxoglutarate catalysed by glutamate dehydrogenase with NADH and NADPH as coenzyme were made at pH7.0 and pH 8.0. The concentrations of both substrates and coenzymes were simultaneously varied over wide ranges. Lineweaver–Burk plots with respect to each substrate and coenzyme were linear, except that with high concentrations of 2-oxoglutarate or coenzyme inhibition occurred. There was no evidence of the negative homotropic interactions between the enzyme subunits that were revealed in previous kinetic studies of the reverse reaction. 2. The initial-rate results are shown to be inconsistent with any of the six possible compulsory-order mechanisms for this three-substrate reaction, and it is concluded that a random-order mechanism is the most likely one. On the basis of this mechanism, the dissociation constants of all the binary, ternary and quaternary complexes of the enzyme and substrates are calculated from initial-rate parameters. 3. The results are discussed in relation to those of earlier workers who concluded that the mechanism is of the compulsory-order type.

scholarly journals The enzymology of short-chain fatty acyl-coenzyme A synthetase from seeds of Pinus radiata. Kinetic studies and a proposed reaction mechanism

1974 ◽  
Vol 137 (3) ◽  
pp. 435-442 ◽  
Author(s):  
Owen A. Young ◽  
John W. Anderson
Keyword(s):  
Fatty Acid ◽  
Pinus Radiata ◽  
Kinetic Studies ◽  
Single Species ◽  
Competitive Inhibitor ◽  
Fatty Acyl ◽  
Short Chain ◽  
Low Concentrations ◽  
High Concentrations ◽  
Acyl Coenzyme A

1. Short-chain fatty acyl-CoA synthetase from seeds of Pinus radiata was examined by acetate- and propionate-dependent PPi–ATP exchange. Reaction mixtures came to equilibrium almost instantly as judged by rates of exchange and analysis of an incubation mixture. 2. The activity of the enzyme was correlated with the concentration of MgP2O72- but not with the concentration of Mg2+, as judged by PPi–ATP exchange and fatty acyl AMP-dependent synthesis of ATP in the presence of PPi. In PPi–ATP exchange assays, no clear relationship between activity and any single species of ATP was apparent. 3. High concentrations of fatty acid inhibited PPi–ATP exchange. PPi–dATP exchange was less than PPi–ATP exchange at low concentrations of fatty acid, but at higher concentrations PPi–dATP exchange exceeded PPi–ATP exchange. The rate of synthesis of fatty acyl-CoA in the presence of dATP was less than with ATP. 4. ATP and propionate inhibited the synthesis of ATP from propionyl-AMP and PPi. The inhibition by ATP was competitive with respect to propionyl-AMP and non-competitive with respect to PPi. The inhibition by propionate was non-competitive with respect to propionyl-AMP and PPi. 5. AMP was a competitive inhibitor of propionyl-AMP-dependent synthesis of ATP and competitively inhibited propionate-dependent PPi–ATP exchange when ATP was the variable substrate. 6. It was concluded that the first partial reaction catalysed by the enzyme is ordered; ATP is the first substrate to react with the enzyme and PPi is probably the only product released.

scholarly journals Kinetics and reaction mechanism of yeast alcohol dehydrogenase with long-chain primary alcohols

1976 ◽  
Vol 157 (1) ◽  
pp. 15-22 ◽  
Author(s):  
W Schöpp ◽  
H Aurich
Keyword(s):  
Alcohol Dehydrogenase ◽  
Dissociation Constants ◽  
Kinetic Studies ◽  
Random Order ◽  
Primary Alcohols ◽  
Yeast Alcohol Dehydrogenase ◽  
Kinetic Coefficients ◽  
Non Linear ◽  
High Concentrations ◽  
Long Chain

Kinetic studies of yeast alcohol dehydrogenase with NAD+ and ethanol, hexanol or decanol as substrates invariably result in non-linear Lineweaver-Burk plots if the alcohol is the variable substrate. The kinetic coefficients determined from secondary plots are consistent with an ‘equilibrium random-order‘ mechanism for extremely low alcohol concentrations and for all alcohols, the transformation of the ternary complexes being the rate-limiting step of the reaction. This mechanism also applies to long-chain substrates at high concentrations, whereas the rate of the ethanol-NAD+ reaction at high ethanol concentrations is determined by the dissociation of the enzyme-NADH complex. The dissociation constants for the enzyme-NAD+ complex and for the enzyme-alcohol complexes obtained from the kinetic quotients satisfactorily correspond to the dissociation constants obtained by use of other techniques. It is suggested that the non-linear curves may be attributed to a structural change in the enzyme itself, caused by the alcohol.

scholarly journals Acetylcholinesterase. Two types of inhibition by an organophosphorus compound: one the formation of phosphorylated enzyme and the other analogous to inhibition by substrate

1969 ◽  
Vol 115 (2) ◽  
pp. 147-162 ◽  
Author(s):  
W. N. Aldridge ◽  
Elsa Reiner
Keyword(s):  
Binding Sites ◽  
Dissociation Constants ◽  
Organophosphorus Compounds ◽  
Active Centre ◽  
Phosphorus Containing ◽  
High Concentrations ◽  
Influence Of Substrate ◽  
A Site ◽  
Kinetics Of ◽  
Related Compounds

1. The kinetics of the reaction of di-(2-chloroethyl) 3-chloro-4-methylcoumarin-7-yl phosphate (haloxon) and related compounds with acetylcholinesterase were studied and found to be unusual. 2. By a progressive reaction haloxon produces a di-(2-chloroethyl)phosphorylated enzyme. The influence of substrate on this reaction leading to a phosphorylated active centre was studied. From competition experiments between inhibitor and substrate values of Km for acetylcholine and acetylthiocholine of 0·79mm and 0·23mm respectively were derived. 3. Haloxon also combines with acetylcholinesterase by a non-progressive reaction, producing a complex that is reversible by dilution and by high concentrations of acetylcholine and acetylthiocholine. From this non-progressive reaction the competition between haloxon and substrate was studied, and it was shown that haloxon combines with a site involved in inhibition by substrate. From competition experiments the following dissociation constants were derived: for combination of haloxon and this site Ki is 4·9μm and for the combination of substrates with this site K88 values are 12mm and 3·3mm for acetylcholine and acetylthiocholine respectively. 4. The non-phosphorus-containing compound 3-chloro-7-hydroxy-4-methylcoumarin was shown to be a good reagent for the site involved in inhibition by substrate; its dissociation constant for the combination with this site is 30μm. 5. In order to interpret the experimental results, theoretical equations were derived for an enzyme with two binding sites to both of which substrate and inhibitor can combine. The equations correlate the activity of the enzyme with the concentration of substrate and inhibitor, for both progressive and non-progressive inhibition. These equations are applicable to reactions of acetylcholinesterase with organophosphorus compounds, carbamates etc. and may be applicable to other enzymes possessing two binding sites.

scholarly journals Thermodynamic and Kinetic Aspects on the Biosorption of Cadmium by Low Cost Materials: A Review

2006 ◽  
Vol 3 (6) ◽  
pp. 400 ◽  
Author(s):  
Pablo Lodeiro ◽  
Roberto Herrero ◽  
Manuel E. Sastre de Vicente
Keyword(s):  
Low Cost ◽  
Kinetic Studies ◽  
Chemical Precipitation ◽  
Point Of View ◽  
Biological Origin ◽  
Biosorption Process ◽  
Low Concentrations ◽  
Passive Adsorption ◽  
High Concentrations

Environmental Context. The toxicity of cadmium in waters can be decreased by using a wide variety of low-cost biomaterials. A number of such investigations are reviewed here and the models used to describe the process of biosorption discussed. Fundamental investigations that probe the thermodynamics and kinetics of the biosorption process are essential for a strong understanding of all biosorption processes. Areas that still need addressing are highlighted, in particular with regard to cadmium biosorption, some models for which are ready to be tested in pilot plants. Abstract. Cadmium is internationally recognized as an important pollutant in the environment, and different methods for its removal from wastewaters (chemical precipitation being the most commonly used) have been reported in the literature. Those methods are in most cases oriented to situations with high concentrations of the pollutant. Thus, alternative removal and recovery methods are being considered for removing very low concentrations of cadmium. These methods are all based on biosorption, the passive adsorption and sequestration of metals by several natural materials of biological origin. In this review we have considered the biosorption of cadmium onto biomaterials from a physicochemical, thermodynamic, and kinetic perspective. The thermodynamic perspective is based on the characterization of the interactions of the binding sites of the biosorbents with cadmium species in aqueous solution. Traditionally, this approach has been quantified using different kinds of isotherms. In addition, the description is completed by taking into account electrostatic effects, and the influence of pH and ionic strength, which are associated with the negative charge developed, in most cases, by the biomaterial. The other point of view in this review is the kinetic one, which is necessary for a full physicochemical description of the sorbate–biosorbent system. Consequently, an updated description of the various approaches commonly employed in kinetic studies in biosorption has been carried out.

scholarly journals Co-operativity in seminal ribonuclease function. Kinetic studies

1988 ◽  
Vol 253 (2) ◽  
pp. 329-336 ◽  
Author(s):  
R Piccoli ◽  
A Di Donato ◽  
G D'Alessio
Keyword(s):  
Kinetic Studies ◽  
Reaction Step ◽  
Binding Studies ◽  
Full Activity ◽  
Substrate Saturation ◽  
High Concentrations ◽  
Rate Limiting ◽  
Kinetics Of

Kinetic studies with substrates of the hydrolytic rate-limiting reaction step revealed that the non-hyperbolic kinetics of bovine seminal RNAse may not be ascribed to microheterogeneity of the enzyme or to hysteretic effects. The substrate saturation curves with intermediate plateau and the activating and inhibiting effects of the reaction product, respectively at low and high concentrations, are explained in terms of mixed co-operativity, with binding at subsites that is a prerequisite for full activity of the enzyme. A model is proposed that is supported also by the results of binding studies.

scholarly journals Kinetic studies of dogfish liver glutamate dehydrogenase

1979 ◽  
Vol 177 (2) ◽  
pp. 449-459 ◽  
Author(s):  
A H Electricwala ◽  
F M Dickinson
Keyword(s):  
Glutamate Dehydrogenase ◽  
Kinetic Data ◽  
Reductive Amination ◽  
Initial Rate ◽  
Kinetic Studies ◽  
Bovine Liver ◽  
Binding Studies ◽  
Degree Of Protection ◽  
Binding Sequence ◽  
Kinetic Features

Initial-rate studies were made of the oxidation of L-glutamate by NAD+ and NADP+ catalysed by highly purified preparations of dogfish liver glutamate dehydrogenase. With NAD+ as coenzyme the kinetics show the same features of coenzyme activation as seen with the bovine liver enzyme [Engel & Dalziel (1969) Biochem. J. 115, 621–631]. With NADP+ as coenzyme, initial rates are much slower than with NAD+, and Lineweaver–Burk plots are linear over extended ranges of substrate and coenzyme concentration. Stopped-flow studies with NADP+ as coenzyme give no evidence for the accumulation of significant concentrations of NADPH-containing complexes with the enzyme in the steady state. Protection studies against inactivation by pyridoxal 5′-phosphate indicate that NAD+ and NADP+ give the same degree of protection in the presence of sodium glutarate. The results are used to deduce information about the mechanism of glutamate oxidation by the enzyme. Initial-rate studies of the reductive amination of 2-oxoglutarate by NADH and NADPH catalysed by dogfish liver glutamate dehydrogenase showed that the kinetic features of the reaction are very similar with both coenzymes, but reactions with NADH are much faster. The data show that a number of possible mechanisms for the reaction may be discarded, including the compulsory mechanism (previously proposed for the enzyme) in which the sequence of binding is NAD(P)H, NH4+ and 2-oxoglutarate. The kinetic data suggest either a rapid-equilibrium random mechanism or the compulsory mechanism with the binding sequence NH4+, NAD(P)H, 2-oxoglutarate. However, binding studies and protection studies indicate that coenzyme and 2-oxoglutarate do bind to the free enzyme.

Radioenzymatic Assay of Catecholamines: Reversal of Aluminium Inhibition of Enzymatic O-Methylation by Desferrioxamine

1983 ◽  
Vol 20 (2) ◽  
pp. 105-111 ◽  
Author(s):  
L Mason ◽  
C Weinkove
Keyword(s):  
Complex Formation ◽  
Biological Samples ◽  
Chelating Agent ◽  
Kinetic Studies ◽  
Metal Chelating ◽  
Radioenzymatic Assay ◽  
Low Concentrations ◽  
High Concentrations

Alumina is commonly used for the purification and concentration of catecholamines in biological specimens before analysis. Acid eluates of alumina, found to contain high concentrations of A13+, interfered with O-methylation but not with N-methylation. The chemistry of the catecholamines, supported by kinetic studies, suggest that complex formation between aluminium and the substrate account for the observed inhibition of O-methylation. The addition of desferrioxamine, a metal-chelating agent, to the reaction mixture reversed this inhibition and, by allowing a preliminary alumina extraction, permits the measurement of low concentrations of catecholamines in biological samples.

scholarly journals Kinetic mechanism of sheep liver NADPH-dependent aldehyde reductase

1987 ◽  
Vol 242 (1) ◽  
pp. 143-150 ◽  
Author(s):  
K S De Jongh ◽  
P J Schofield ◽  
M R Edwards
Keyword(s):  
Kinetic Mechanism ◽  
Product Inhibition ◽  
Enzyme Mechanism ◽  
Free Enzyme ◽  
Aldehyde Reductase ◽  
Binding Studies ◽  
Sheep Liver ◽  
Low Concentrations ◽  
High Concentrations ◽  
Inhibition Studies

The kinetic mechanism of the major sheep liver aldehyde reductase (ALR1) was studied with three aldehyde substrates: p-nitrobenzaldehyde, pyridine-3-aldehyde and D-glucuronate. In each case the enzyme mechanism was sequential and product-inhibition studies were consistent with an ordered Bi Bi mechanism, with the coenzymes binding to the free enzyme. Binding studies were used to investigate the interactions of substrates, products and inhibitors with the free enzyme. These provided evidence for the binding of D-glucuronate, L-gulonate and valproate, as well as NADP+ and NADPH. The enzyme was inhibited by high concentrations of D-glucuronate in a non-competitive manner, indicating that this substrate was able to bind to the free enzyme and to the E X NADP+ complex at elevated concentrations. Although the enzyme was inhibited by high pyridine-3-aldehyde concentrations, there was no evidence for the binding of this substrate to the free enzyme. Sheep liver ALR1 was inhibited by the ionized forms of alrestatin, sorbinil, valproate, 2-ethylhexanoate and phenobarbitone, indicating the presence of an anion-binding site similar to that described for the pig liver enzyme, which interacts with inhibitors and substrates containing a carboxy group. Sorbinil, valproate and 2-ethylhexanoate inhibited the enzyme uncompetitively at low concentrations and non-competitively at high concentrations, whereas phenobarbitone and alrestatin were non-competitive and uncompetitive inhibitors respectively. The significance of these results with respect to inhibitor and substrate binding is discussed.

scholarly journals Human B cell activation. Evidence for diverse signals provided by various monoclonal anti-IgM antibodies.

1985 ◽  
Vol 162 (4) ◽  
pp. 1236-1255 ◽  
Author(s):  
S M Rudich ◽  
R Winchester ◽  
P K Mongini
Keyword(s):  
T Cell ◽  
B Cell ◽  
Cell Activation ◽  
B Cell Activation ◽  
Binding Studies ◽  
Binding Characteristics ◽  
Low Concentrations ◽  
High Concentrations ◽  
The Individual ◽  
Cell Supernatant

Seven murine monoclonal antibodies (mAb) with different binding characteristics for human IgM varied markedly in their ability to induce proliferation of T cell-depleted human splenocytes. Two mAb (HB57 and 5D7) that bound to distinct epitopes on IgM were highly effective initiators of B cell proliferation at very low concentrations, in the presence of a T cell factor source. In the absence of T cell supernatant, both HB57 and 5D7 mAbs produced a markedly reduced degree of stimulation at all concentrations. Two additional anti-IgM mAb (VIIIE11 and Mu53) were distinctive in that, even at high concentrations, only limited proliferation was observed compared with the first group of mAb. This proliferation depended on the presence of T cell supernatant. Competitive-binding studies revealed that the epitope recognized by mAb Mu53 may be identical or very proximate to that recognized by HB57. Three other mAb (1G6, XG9, and P24) induced little or no proliferation. 1G6 bound to a unique epitope on the IgM molecule, whereas XG9 shared a determinant with VIIIE11 mAb. Regulatory influences of Fc receptor binding cannot account for all the diversity in proliferation observed with the individual anti-IgM mAb. Markedly augmented proliferation was obtained when B cells were cultured with certain combinations of anti-IgM mAb in the presence of exogenous T cell supernatant. The proliferation induced in the absence of T cell supernatant by high concentrations of mAb mixtures that included 1G6 approached that observed for the same mixtures in the presence of T cell supernatant. The data suggest that certain signals delivered through membrane IgM can bypass the need for T cell supernatant in the activation of human B lymphocytes.

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