scholarly journals Appendix: Mathematical approaches to the evaluation of the flux of γ-aminobutyrate in brain tissue in vitro

1970 ◽  
Vol 116 (3) ◽  
pp. 461-467 ◽  
Author(s):  
B. J. Hammond ◽  
T. Julian ◽  
Y. Machiyama ◽  
R. Balázs

In the preceding paper (Balázs, Machiyama, Hammond, Julian & Richter, 1970) the flux of γ-aminobutyrate (GABA) was found, in guinea-pig brain-cortex slices incubated in glucose–saline medium, to represent about 10% of the total tricarboxylic acid cycle flux, as opposed to other estimates, which are as high as 40%. However, the latter value was deduced from experimental results by methods that made no allowance for the metabolic compartmentation of glutamate: a mathematical investigation was therefore undertaken to show that this omission necessarily leads to an overestimation of GABA flux. The magnitude of this over-estimation was shown by computer simulation methods to be of such an order as to bring the corrected value into agreement with the lower value. Computer simulation methods were also used to evaluate the GABA flux from the experimental results presented by Balázs et al. (1970) and a value of 0.0315μmol/min per g wet wt. was obtained. This value was also shown to be consistent, in the simulated system, with the experimentally observed time-courses for the radioactivity and quantity of aspartate. Since there is now evidence that GABA is itself a metabolically compartmented intermediate this possibility was considered mathematically, but it was found that in this case the assumption of compartmentation had little effect upon the value of GABA flux deduced on the basis of GABA homogeneity.

1970 ◽  
Vol 25 (12) ◽  
pp. 1844-1855 ◽  
Author(s):  
B. Dischler

Abstract The effects of internal strains on the tunneling levels of KCl : Li are investigated quantitatively. The method, as developed in a preceding paper by TIMME, DISCHLER, and ESTLE1 , is further improved here. A reinterpretation is presented for two experimental results reported in the literature: the resonances in the phonon spectrometer curve and the specific heat (Schottky) anomaly. The agreement with these experiments and also with paraelectric resonance is good, if isotropic strains are assumed with an average energy of 20 GHz, corresponding to a stress of 30 ± 10 kp/cm2 . For the cube edge tunneling interaction a value of 10 GHz is derived.


1970 ◽  
Vol 116 (3) ◽  
pp. 469-481 ◽  
Author(s):  
B. J. Hammond ◽  
Y. Machiyama ◽  
R. Balázs ◽  
T. Julian ◽  
D. Richter

1. The metabolism of γ-aminobutyrate (GABA) was investigated in cerebral-cortex slices incubated in glucose–saline medium with [1-14C]GABA and [U-14C]-glucose as labelled substrates. 2. A rapid release of GABA from the tissue, amounting to 25–30% of the total, was observed on addition of 66m-equiv. of K+/1 to the medium; the liberation of other amino acids was relatively small. The effect was apparently specific for K+; GABA was not released on addition of equivalent amounts of Na+ or on increasing the respiration rate with 10mm-ammonium chloride. The results show that GABA behaves like the transmitter compounds (acetylcholine, catecholamines) on K+ stimulation, and therefore now satisfies certain of the criteria required for a transmitter in mammalian brain. 3. The release of GABA from the tissue on addition of K+ was followed by a slow re-uptake. The rate of uptake of GABA in a medium containing 5.9m-equiv. of K+/1 was more than four times that in a medium containing 66m-equiv. of K+/1. 4. The concentration of GABA in brain tissue incubated for 1h in a medium containing 66m-equiv. of K+/1 was about 50% higher than that observed under normal conditions. 5. There was evidence that exogenous [14C]GABA mixed with the endogenous pool(s), since the proportion of the total GABA released on K+ stimulation was the same, and the specific radioactivity of the liberated GABA was close to that remaining in the tissue, whether the GABA was labelled by [1-14C]GABA from the medium or generated in the tissue from [14C]glucose. 6. On the basis of these findings and the observations outlined in the preceding papers it was possible to calculate the kinetic constants of GABA metabolism by computer simulation of the results. K+ stimulation led to a 2.5-fold increase in the flux through the tricarboxylic acid cycle, whereas the flux in the GABA bypath was little affected; as a result the flux through the GABA bypath, which under normal conditions was 8% of that through the tricarboxylic acid cycle, decreased to 3–5%. 7. The metabolism of glutamine was greatly affected by K+-stimulation. The ratio of the concentration of glutamine in the slices to that in the medium, which under normal conditions was the smallest among the amino acids investigated, increased from about 17 to 63 in 1h. This effect was attributable partly to an uptake of glutamine from the medium (1.8μmol/h per g) and partly to a net increase in the total amount of glutamine (2.6μmol/h per g). At 1h after the addition of K+ the net gain of glutamine could be accounted for by the decrease of glutamate. 8. Metabolic compartmentation was evident when brain-cortex slices were incubated in glucose–saline medium and the labelled substrate was [14C]GABA, since the specific radioactivity of glutamine exceeded that of glutamate. On addition of K+ the signs of metabolic compartmentation promptly disappeared: this effect was apparently associated with an increase in the permeability of the compartments containing labelled metabolites derived from [14C]GABA. The change in the permeability, however, did not affect all the compartments; when the labelled substrate was [14C]glucose the equilibration of labelled amino acids between tissue and medium was similar under normal conditions and in the presence of high concentrations of K+. 9. The metabolism of [14C]glucose was followed by measuring oxygen uptake, respiratory 14CO2, and incorporation of 14C into amino acids. The results showed that K+ stimulation increased the flux of glucose carbon, both in the glycolytic pathway and in the tricarboxylic acid cycle.


1965 ◽  
Vol 208 (5) ◽  
pp. 841-846 ◽  
Author(s):  
Julia Z. Rutman ◽  
Lawrence E. Meltzer ◽  
J. Roderick Kitchell ◽  
Robert J. Rutman ◽  
Philip George

The effect of metal ions on glucose formation from amino acids and glycolytic and tricarboxylic acid cycle intermediates has been examined in rat kidney cortex slices in vitro. Of the metals tested, only Mn++ and Ca++ have been shown to be stimulatory, while Zn++, Cu++, and Cd++ are inhibitory. The case of Mn++ activation is of particular interest because Mg++ ions are inactive in this system, despite the similarities usually observed in the in vitro systems. The stimulation of gluconeogenesis from α-keto acids is comparable for both Ca++ and Mn++, in contrast to the lack of a Mn++ effect with the homologous l-α-amino acids. Evidence is presented as to the possible significance of metal ions in regulating carbohydrate metabolism.


2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Olanrewaju Ayodeji Durojaye ◽  
Nkwachukwu Oziamara Okoro ◽  
Arome Solomon Odiba

Abstract Background The novel coronavirus SARS-CoV-2 is currently a global threat to health and economies. Therapeutics and vaccines are in rapid development; however, none of these therapeutics are considered as absolute cure, and the potential to mutate makes it necessary to find therapeutics that target a highly conserved regions of the viral structure. Results In this study, we characterized an essential but poorly understood coronavirus accessory X4 protein, a core and stable component of the SARS-CoV family. Sequence analysis shows a conserved ~ 90% identity between the SARS-CoV-2 and previously characterized X4 protein in the database. QMEAN Z score of the model protein shows a value of around 0.5, within the acceptable range 0–1. A MolProbity score of 2.96 was obtained for the model protein and indicates a good quality model. The model has Ramachandran values of φ = − 57o and ψ = − 47o for α-helices and values of φ = − 130o and ψ = + 140o for twisted sheets. Conclusions The protein data obtained from this study provides robust information for further in vitro and in vivo experiment, targeted at devising therapeutics against the virus. Phylogenetic analysis further supports previous evidence that the SARS-CoV-2 is positioned with the SL-CoVZC45, BtRs-BetaCoV/YN2018B and the RS4231 Bat SARS-like corona viruses.


2012 ◽  
Vol 182-183 ◽  
pp. 1751-1755
Author(s):  
Xi Feng Zheng ◽  
Feng Chang

For the purposes of correcting the LED display image, a method based on computer simulation is proposed. First, the development of the LED display panel is introduced. Second, analyze the causes of the problem which image in LED display panel has serious high non-uniformity, and introduce the existed correction techniques which are used to reduce the non-uniformity of LED display image. Simultaneously, point out the ground for shortcomings of these techniques. Third, describe the principle of correction method based on computer simulation detail from two steps, which are the luminous collection and luminous copulation. Forth, describe the realization steps of this method in accordance with the third step. Finally, this method is supplied in a LED display panel, whose resolution is 640×480. Experimental results show that this method is able to reduce the non-uniformity of images from 11.06% to 0.98%..


1996 ◽  
Vol 271 (3) ◽  
pp. F717-F722
Author(s):  
G. Bajaj ◽  
M. Baum

Intracellular cystine loading by use of cystine dimethyl ester (CDME) results in a generalized inhibition in proximal tubule transport due, in part, to a decrease in intracellular ATP. The present study examined the importance of phosphate and metabolic substrates in the proximal tubule dysfunction produced by cystine loading. Proximal tubule intracellular phosphorus was 1.8 +/- 0.1 in control tubules and 1.1 +/- 0.1 nmol/mg protein in proximal tubules incubated in vitro with CDME P < 0.001). Infusion of sodium phosphate in rabbits and subsequent incubation of proximal tubules with a high-phosphate medium attenuated the decrease in proximal tubule respiration and prevented the decrease in intracellular ATP with cystine loading. Tricarboxylic acid cycle intermediates have been shown to preserve oxidative metabolism in phosphate-depleted proximal tubules. In proximal tubules incubated with either 1 mM valerate or butyrate, there was a 42 and 34% reduction (both P < 0.05) in the rate of oxygen consumption with cystine loading. However, tubules incubated with 1 mM succinate or citrate had only a 13 and 14% P = NS) reduction in the rate of oxygen consumption, respectively. These data are consistent with a limitation of intracellular phosphate in the pathogenesis of the proximal tubule dysfunction with cystine loading.


1991 ◽  
Vol 3 (5) ◽  
pp. 571 ◽  
Author(s):  
JG Thompson ◽  
AC Simpson ◽  
PA Pugh ◽  
RW Wright ◽  
HR Tervit

Embryos were collected from superovulated donors at various intervals from onset of oestrus, ranging from Day 1.5 to Day 6. In addition, blastocysts obtained from the culture of 1-cell embryos collected in vivo or of oocytes matured and fertilized in vitro were used to assess the effects of in vitro manipulation and culture on glucose utilization. Glycolytic activity was determined by the conversion of [5-3H]glucose to 3H2O, and oxidation of glucose was determined by the conversion of [U-14C]glucose to 14CO2. Glucose utilization increases significantly from the 8-cell stage and during compaction and blastulation. Glucose oxidation was at a relatively low level (5-12% of total utilization) compared with glycolysis. No difference was observed between the glycolytic activity of blastocysts derived from in vivo or in vitro sources. However, glucose oxidation was lower (P less than 0.05) in blastocysts derived from the culture of 1-cell embryos or from oocytes matured and fertilized in vitro. Exogenous tricarboxylic acid cycle substrates (i.e. pyruvate and lactate supplied in the medium) affected the level of glucose oxidation.


1967 ◽  
Vol 105 (1) ◽  
pp. 333-341 ◽  
Author(s):  
Kirsti Lampiaho ◽  
E. Kulonen

1. The metabolism of incubated slices of sponge-induced granulation tissue, harvested 4–90 days after the implantation, was studied with special reference to the capacity of collagen synthesis and to the energy metabolism. Data are also given on the nucleic acid contents during the observation period. Three metabolic phases were evident. 2. The viability of the slices for the synthesis of collagen was studied in various conditions. Freezing and homogenization destroyed the capacity of the tissue to incorporate proline into collagen. 3. Consumption of oxygen reached the maximum at 30–40 days. There was evidence that the pentose phosphate cycle was important, especially during the phases of the proliferation and the involution. The formation of lactic acid was maximal at about 20 days. 4. The capacity to incorporate proline into collagen hydroxyproline in vitro was limited to a relatively short period at 10–30 days. 5. The synthesis of collagen was dependent on the supply of oxygen and glucose, which latter could be replaced in the incubation medium by other monosaccharides but not by the metabolites of glucose or tricarboxylic acid-cycle intermediates.


1986 ◽  
Vol 71 ◽  
Author(s):  
I. Suni ◽  
M. Finetti ◽  
K. Grahn

AbstractA computer model based on the finite element method has been applied to evaluate the effect of the parasitic area between contact and diffusion edges on end resistance measurements in four terminal Kelvin resistor structures. The model is then applied to Al/Ti/n+ Si contacts and a value of contact resistivity of Qc = 1.8×10−7.Ωcm2 is derived. For comparison, the use of a self-aligned structure to avoid parasitic effects is presented and the first experimental results obtained on Al/Ti/n+Si and Al/CoSi2/n+Si contacts are shown and discussed.


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