The microenvironment and pKa perturbation of aminoacyl-tRNA guided the selection of cationic amino acids

2021 ◽  
Vol 19 (37) ◽  
pp. 8049-8056
Author(s):  
Bibhas Hazra ◽  
Mahesh Prasad ◽  
Rajat Roy ◽  
Pradip K. Tarafdar
Keyword(s):  
Amino Acids ◽  
Cationic Amino Acids ◽  
The Stability ◽  
Selection Of

The selection of cationic amino acids as proteinogenic over the lower analogues was highlighted. The stability of aa-tRNA, pKa perturbation and regioselectivity to α-amines could have shaped the selection of cationic amino acids.

scholarly journals Dicarboxylic Amino Acid Influx across Brush Border of Rabbit Ileum

1970 ◽  
Vol 56 (5) ◽  
pp. 621-639 ◽  
Author(s):  
Stanley G. Schultz ◽  
Lorna Yu-Tu ◽  
Osvaldo O. Alvarez ◽  
Peter F. Curran
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Brush Border ◽  
Competitive Inhibition ◽  
Binary Complex ◽  
Rabbit Ileum ◽  
Dicarboxylic Amino Acid ◽  
Rabbit Intestine ◽  
Cationic Amino Acids ◽  
The Stability

Glutamate and aspartate influxes across the brush border of rabbit intestine are saturable processes that are subject to competitive inhibition and are markedly influenced by the Na concentration in the mucosal solution. Lowering the Na concentration increases the amino acid concentration needed to elicit a half-maximal influx but does not significantly affect the maximal influx. The interaction between Na and anionic amino acid influx can be described by the same kinetic model that has been applied to the influxes of neutral amino acids and lysine. Comparison of the kinetic parameters for anionic, neutral, and cationic amino acids suggests that amino acid charge influences (a) the stability of the binary (amino acid-site) complex and (b) the affinity of this binary complex for the subsequent binding of Na. A mechanistic interpretation of these interactions is proposed.

scholarly journals Spatio-temporal selection of reference genes in the two congeneric species of Glycyrrhiza

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Yuping Li ◽  
Xiaoju Liang ◽  
Xuguo Zhou ◽  
Yu An ◽  
Ming Li ◽  
...  
Keyword(s):  
Gene Expression ◽  
Developmental Stage ◽  
Reference Genes ◽  
Developmental Stages ◽  
Individual Factors ◽  
Congeneric Species ◽  
Spatio Temporal ◽  
The Stability ◽  
Different Tissues ◽  
Selection Of

AbstractGlycyrrhiza, a genus of perennial medicinal herbs, has been traditionally used to treat human diseases, including respiratory disorders. Functional analysis of genes involved in the synthesis, accumulation, and degradation of bioactive compounds in these medicinal plants requires accurate measurement of their expression profiles. Reverse transcription quantitative real-time PCR (RT-qPCR) is a primary tool, which requires stably expressed reference genes to serve as the internal references to normalize the target gene expression. In this study, the stability of 14 candidate reference genes from the two congeneric species G. uralensis and G. inflata, including ACT, CAC, CYP, DNAJ, DREB, EF1, RAN, TIF1, TUB, UBC2, ABCC2, COPS3, CS, R3HDM2, were evaluated across different tissues and throughout various developmental stages. More importantly, we investigated the impact of interactions between tissue and developmental stage on the performance of candidate reference genes. Four algorithms, including geNorm, NormFinder, BestKeeper, and Delta Ct, were used to analyze the expression stability and RefFinder, a comprehensive software, provided the final recommendation. Based on previous research and our preliminary data, we hypothesized that internal references for spatio-temporal gene expression are different from the reference genes suited for individual factors. In G. uralensis, the top three most stable reference genes across different tissues were R3HDM2, CAC and TUB, while CAC, CYP and ABCC2 were most suited for different developmental stages. CAC is the only candidate recommended for both biotic factors, which is reflected in the stability ranking for the spatio (tissue)-temporal (developmental stage) interactions (CAC, R3HDM2 and DNAJ). Similarly, in G. inflata, COPS3, R3HDM2 and DREB were selected for tissues, while RAN, COPS3 and CS were recommended for developmental stages. For the tissue-developmental stage interactions, COPS3, DREB and ABCC2 were the most suited reference genes. In both species, only one of the top three candidates was shared between the individual factors and their interactions, specifically, CAC in G. uralensis and COPS3 in G. inflata, which supports our overarching hypothesis. In summary, spatio-temporal selection of reference genes not only lays the foundation for functional genomics research in Glycyrrhiza, but also facilitates these traditional medicinal herbs to reach/maximize their pharmaceutical potential.

Stabilization of networked switched affine systems with event-triggered strategy

2021 ◽  
pp. 014233122110213
Author(s):  
Dandan Li ◽  
Zhiqiang Zuo ◽  
Yijing Wang
Keyword(s):  
Affine Systems ◽  
Switching Law ◽  
Event Time ◽  
Sliding Motion ◽  
State Dependent ◽  
Event Triggering ◽  
Stability Issue ◽  
The Stability ◽  
Event Based ◽  
Selection Of

Using an event-based switching law, we address the stability issue for continuous-time switched affine systems in the network environment. The state-dependent switching law in terms of the region function is firstly developed. We combine the region function with the event-triggering mechanism to construct the switching law. This can provide more candidates for the selection of the next activated subsystem at each switching instant. As a result, it is possible for us to activate the appropriate subsystem to avoid the sliding motion. The Zeno behavior for the switched affine system can be naturally ruled out by guaranteeing a positive minimum inter-event time between two consecutive executions of the event-triggering threshold. Finally, two numerical examples are given to demonstrate the effectiveness of the proposed method.

The Weight of Fear of Violence in Household Budgets

2021 ◽  
pp. 073401682110383
Author(s):  
Bruno Truzzi ◽  
Marcelo Justus ◽  
Henrique C. Kawamura ◽  
Thomas V. Conti
Keyword(s):  
Instrumental Variables ◽  
Regularization Method ◽  
Household Level ◽  
Household Spending ◽  
Goods And Services ◽  
Level Ii ◽  
The Stability ◽  
The Relationship ◽  
Selection Of

This article investigates the relationship between the perception of violence and the spending on security goods and services in households. Individual microdata from a random national survey on family budget carried out in Brazil in 2008-2009 were used for modeling the household spending using two instrumental variables. The stability of results was checked by applying the Lasso-Gaussian regularization method in the selection of the statistically significant variables. Positive relationships were found between household spending on security goods and services and (i) the fear of insecurity at the household level, (ii) the neighbors’ spending on security, and (iii) the registered criminality, but no evidence was found on the relationship between the role of police on household spending on security goods and services.

scholarly journals SURVEYING IN THE STUDIES OF THE STABILITY OF EARTHY CONSTRUCTIONS, FOCUS ON SELECTED HISTORICAL MOUNDS IN KRAKOW (POLAND)

2016 ◽  
Vol 22 (2) ◽  
pp. 324-341
Author(s):  
Rafał Gawałkiewicz ◽  
Anna Szafarczyk
Keyword(s):  
Landslide Monitoring ◽  
Measurement Technology ◽  
Degree Of Deformation ◽  
Soil Creep ◽  
Measurement Series ◽  
Efficient Protection ◽  
The Stability ◽  
The Impact ◽  
Measurement Base ◽  
Selection Of

Mounds, as anthropogenic constructions of a very delicate structure, are subdued to constant changes, which, due to the impact of external factors (prolonged precipitation, tremors) are subdued to deformations in the form of mass movements. These phenomena usually have the character of mild soil creep in time and sometimes, as a result of rapid loss of stability, they are seriously damaged by landslide. This phenomenon causes temporary exclusion of the object from use. In the framework of the protection of these objects, the maintenance was carried out within the preventive measures referring to the construction and surveying monitoring of the geometry changes in time, as a result of phenomena taking place in the ground medium under the influence of environmental factors causing strains. The process of the deformation of mounds is similar to the characteristic, according to the Terzagie's theory. The application of surveying technologies of high precision allows the monitoring of changes in their geometry in time. The properly defined study area and the proper selection of measurement technology in the aspect of the accuracy of the prediction of changes, can efficiently help in defining the scale of deformations in the decisive process referring to the way of efficient protection of barrows. The article presents the results of point monitoring carried out with surveying technologies within 11 measurement series carried out on the selected measurement base of the Wanda Mound. The use of measurement technologies of integrated and specialist software, allows complex assessment of the degree of deformation and the trends of these changes in time, as well as identifying anomaly zones in the framework of the landslide monitoring.

Sign in / Sign up

Export Citation Format

Share Document