scholarly journals Triggering a transient organo-gelation system in a chemically active solvent

2021 ◽  
Vol 57 (80) ◽  
pp. 10375-10378
Author(s):  
Romain Chevigny ◽  
Johanna Schirmer ◽  
Carmen C. Piras ◽  
Andreas Johansson ◽  
Elina Kalenius ◽  
...  
Keyword(s):  
Chemical Equilibria ◽  
Dynamic Assembly ◽  
Active Solvent

A dynamic gelation system, in which the solvent intimately controls the chemical equilibria which underpin the dynamic assembly event.

scholarly journals Probing bacterial cell wall growth by tracing wall-anchored protein complexes

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Yi-Jen Sun ◽  
Fan Bai ◽  
An-Chi Luo ◽  
Xiang-Yu Zhuang ◽  
Tsai-Shun Lin ◽  
...  
Keyword(s):  
Cell Wall ◽  
Cell Shape ◽  
Bernoulli Shift ◽  
Protein Complexes ◽  
Axial Direction ◽  
Cell Wall Growth ◽  
Flagellar Motors ◽  
Shift Map ◽  
Dynamic Assembly ◽  
Wall Growth

AbstractThe dynamic assembly of the cell wall is key to the maintenance of cell shape during bacterial growth. Here, we present a method for the analysis of Escherichia coli cell wall growth at high spatial and temporal resolution, which is achieved by tracing the movement of fluorescently labeled cell wall-anchored flagellar motors. Using this method, we clearly identify the active and inert zones of cell wall growth during bacterial elongation. Within the active zone, the insertion of newly synthesized peptidoglycan occurs homogeneously in the axial direction without twisting of the cell body. Based on the measured parameters, we formulate a Bernoulli shift map model to predict the partitioning of cell wall-anchored proteins following cell division.

scholarly journals NMR of Natural Products as Potential Drugs

Molecules ◽  
2021 ◽  
Vol 26 (12) ◽  
pp. 3763
Author(s):  
Poul Erik Hansen
Keyword(s):  
Natural Products ◽  
Hydrogen Bonding ◽  
Density Functional ◽  
Chemical Shifts ◽  
Isotope Effects ◽  
Density Functional Theory Calculations ◽  
Intramolecular Hydrogen Bonding ◽  
Chemical Equilibria ◽  
Nmr Techniques ◽  
Intramolecular Hydrogen

This review outlines methods to investigate the structure of natural products with emphasis on intramolecular hydrogen bonding, tautomerism and ionic structures using NMR techniques. The focus is on 1H chemical shifts, isotope effects on chemical shifts and diffusion ordered spectroscopy. In addition, density functional theory calculations are performed to support NMR results. The review demonstrates how hydrogen bonding may lead to specific structures and how chemical equilibria, as well as tautomeric equilibria and ionic structures, can be detected. All these features are important for biological activity and a prerequisite for correct docking experiments and future use as drugs.

scholarly journals Insight into the AcrAB-TolC Complex Assembly Process Learned from Competition Studies

Antibiotics ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 830
Author(s):  
Prasangi Rajapaksha ◽  
Isoiza Ojo ◽  
Ling Yang ◽  
Ankit Pandeya ◽  
Thilini Abeywansha ◽  
...  
Keyword(s):  
Efflux Pump ◽  
Dominant Negative ◽  
Dominant Negative Effect ◽  
Assembly Process ◽  
Multidrug Efflux ◽  
E Coli ◽  
Multidrug Efflux Pumps ◽  
Negative Effect ◽  
Dynamic Assembly ◽  
Pump Assembly

The RND family efflux pump AcrAB-TolC in E. coli and its homologs in other Gram-negative bacteria are major players in conferring multidrug resistance to the cells. While the structure of the pump complex has been elucidated with ever-increasing resolution through crystallography and Cryo-EM efforts, the dynamic assembly process remains poorly understood. Here, we tested the effect of overexpressing functionally defective pump components in wild type E. coli cells to probe the pump assembly process. Incorporation of a defective component is expected to reduce the efflux efficiency of the complex, leading to the so called “dominant negative” effect. Being one of the most intensively studied bacterial multidrug efflux pumps, many AcrA and AcrB mutations have been reported that disrupt efflux through different mechanisms. We examined five groups of AcrB and AcrA mutants, defective in different aspects of assembly and substrate efflux. We found that none of them demonstrated the expected dominant negative effect, even when expressed at concentrations many folds higher than their genomic counterpart. The assembly of the AcrAB-TolC complex appears to have a proof-read mechanism that effectively eliminated the formation of futile pump complex.

scholarly journals The role of VPS4 in ESCRT-III polymer remodeling

2019 ◽  
Vol 47 (1) ◽  
pp. 441-448 ◽  
Author(s):  
Christophe Caillat ◽  
Sourav Maity ◽  
Nolwenn Miguet ◽  
Wouter H. Roos ◽  
Winfried Weissenhorn
Keyword(s):  
Active Role ◽  
Mechanistic Models ◽  
Membrane Remodeling ◽  
Filament Formation ◽  
Enveloped Viruses ◽  
Endosomal Sorting ◽  
Membrane Fission ◽  
Dynamic Assembly ◽  
Inside Out

Abstract The endosomal sorting complex required for transport-III (ESCRT-III) and VPS4 catalyze a variety of membrane-remodeling processes in eukaryotes and archaea. Common to these processes is the dynamic recruitment of ESCRT-III proteins from the cytosol to the inner face of a membrane neck structure, their activation and filament formation inside or at the membrane neck and the subsequent or concomitant recruitment of the AAA-type ATPase VPS4. The dynamic assembly of ESCRT-III filaments and VPS4 on cellular membranes induces constriction of membrane necks with large diameters such as the cytokinetic midbody and necks with small diameters such as those of intraluminal vesicles or enveloped viruses. The two processes seem to use different sets of ESCRT-III filaments. Constriction is then thought to set the stage for membrane fission. Here, we review recent progress in understanding the structural transitions of ESCRT-III proteins required for filament formation, the functional role of VPS4 in dynamic ESCRT-III assembly and its active role in filament constriction. The recent data will be discussed in the context of different mechanistic models for inside-out membrane fission.

Modelling and Experimental Studies of Sorption in the Near Field of a Cementitious Repository

1989 ◽  
Vol 176 ◽  
Author(s):  
P.L. Brown ◽  
A. Haworth ◽  
R. McCrohon ◽  
S.M. Sharland ◽  
C.J. Tweed
Keyword(s):  
Near Field ◽  
Experimental Studies ◽  
Mass Action ◽  
Chemical Equilibria ◽  
Transport Code ◽  
Mass Action Model ◽  
Action Model ◽  
Modelling Studies ◽  
Simple Mass

ABSTRACTA joint experimental and modelling programme is reported, which aims to improve our understanding of sorption processes of radionuclides onto repository materials. Diffusion/sorption experiments of sorption onto cement are described, although results are limited at this stage. The modelling studies use the coupled chemical equilibria and transport code CHEQMATE to simulate some of these experiments. The chemical part of the model is based on a simple mass-action model of sorption. More detailed comparisons will continue when the experiments are terminated, and the samples are sectioned.

Characterization of saline aqueous solutions upwelling under Ceres' surface: a focus on chemical equilibria in the H2O-CO2-NaCl supply ascent system

2019 ◽  
Author(s):  
Maria PEDONE ◽  
Eleonora Ammannito ◽  
Christina Plainaki ◽  
Maria Cristina De Sanctis ◽  
Andrea Raponi ◽  
...  
Keyword(s):  
Aqueous Solutions ◽  
Chemical Equilibria

Shifting Chemical Equilibria in Flow-Efficient Decarbonylation Driven by Annular Flow Regimes

2014 ◽  
Vol 126 (43) ◽  
pp. 11741-11745 ◽  
Author(s):  
Bernhard Gutmann ◽  
Petteri Elsner ◽  
Toma Glasnov ◽  
Dominique M. Roberge ◽  
C. Oliver Kappe
Keyword(s):  
Annular Flow ◽  
Flow Regimes ◽  
Chemical Equilibria

scholarly journals Another Way to Solve Complex Chemical Equilibria

1990 ◽  
Vol 38 (2) ◽  
pp. 355-358 ◽  
Author(s):  
Daniel P. Heyman
Keyword(s):  
Chemical Equilibria ◽  
Complex Chemical
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