scholarly journals DeepRMethylSite: a deep learning based approach for prediction of arginine methylation sites in proteins

2020 ◽  
Vol 16 (5) ◽  
pp. 448-454 ◽  
Author(s):  
Meenal Chaudhari ◽  
Niraj Thapa ◽  
Kaushik Roy ◽  
Robert H. Newman ◽  
Hiroto Saigo ◽  
...  

DeepRMethylSite is an ensemble-based deep learning model that takes protein sequences as input and predicts sites of Arginine methylation. The implementation and source code are provided at https://github.com/dukkakc/DeepRMethylSite.

IEEE Access ◽  
2019 ◽  
Vol 7 ◽  
pp. 141987-141999 ◽  
Author(s):  
Farhan Ullah ◽  
Junfeng Wang ◽  
Sohail Jabbar ◽  
Fadi Al-Turjman ◽  
Mamoun Alazab

Author(s):  
Abdul Mannan Omi ◽  
Monir Hossain ◽  
Md Nahidul Islam ◽  
Tanni Mittra

2020 ◽  
Vol 13 (4) ◽  
pp. 627-640 ◽  
Author(s):  
Avinash Chandra Pandey ◽  
Dharmveer Singh Rajpoot

Background: Sentiment analysis is a contextual mining of text which determines viewpoint of users with respect to some sentimental topics commonly present at social networking websites. Twitter is one of the social sites where people express their opinion about any topic in the form of tweets. These tweets can be examined using various sentiment classification methods to find the opinion of users. Traditional sentiment analysis methods use manually extracted features for opinion classification. The manual feature extraction process is a complicated task since it requires predefined sentiment lexicons. On the other hand, deep learning methods automatically extract relevant features from data hence; they provide better performance and richer representation competency than the traditional methods. Objective: The main aim of this paper is to enhance the sentiment classification accuracy and to reduce the computational cost. Method: To achieve the objective, a hybrid deep learning model, based on convolution neural network and bi-directional long-short term memory neural network has been introduced. Results: The proposed sentiment classification method achieves the highest accuracy for the most of the datasets. Further, from the statistical analysis efficacy of the proposed method has been validated. Conclusion: Sentiment classification accuracy can be improved by creating veracious hybrid models. Moreover, performance can also be enhanced by tuning the hyper parameters of deep leaning models.


2021 ◽  
Vol 296 ◽  
pp. 126564
Author(s):  
Md Alamgir Hossain ◽  
Ripon K. Chakrabortty ◽  
Sondoss Elsawah ◽  
Michael J. Ryan

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