scholarly journals Site-by-site tracking of signal transduction in an azidophenyalanine-labeled bacteriophytochrome with step-scan FTIR spectroscopy

Author(s):  
Moona Kurttila ◽  
Brigitte Stucki-Buchli ◽  
Jessica Rumfeldt ◽  
Lea Schroeder ◽  
Heikki Häkkänen ◽  
...  

Signal propagation in photosensory proteins is a complex and multidimensional event. Unraveling such mechanisms site-specifically in real time is an eligible but a challenging goal. Here, we elucidate the site-specific...

2018 ◽  
Vol 10 (7) ◽  
pp. 1157 ◽  
Author(s):  
Zhetao Zhang ◽  
Bofeng Li ◽  
Yunzhong Shen ◽  
Yang Gao ◽  
Miaomiao Wang

In Global Navigation Satellite System (GNSS) positioning, observation precisions are frequently impacted by the site-specific unmodeled errors, especially for the code observations that are widely used by smart phones and vehicles in urban environments. The site-specific unmodeled errors mainly refer to the multipath and other space loss caused by the signal propagation (e.g., non-line-of-sight reception). As usual, the observation precisions are estimated by the weighting function in a stochastic model. Only once the realistic weighting function is applied can we obtain the precise positioning results. Unfortunately, the existing weighting schemes do not fully take these site-specific unmodeled effects into account. Specifically, the traditional weighting models indirectly and partly reflect, or even simply ignore, these unmodeled effects. In this paper, we propose a real-time adaptive weighting model to mitigate the site-specific unmodeled errors of code observations. This unmodeled-error-weighted model takes full advantages of satellite elevation angle and carrier-to-noise power density ratio (C/N0). In detail, elevation is taken as a fundamental part of the proposed model, then C/N0 is applied to estimate the precision of site-specific unmodeled errors. The principle of the second part is that the measured C/N0 will deviate from the nominal values when the signal distortions are severe. Specifically, the template functions of C/N0 and its precision, which can estimate the nominal values, are applied to adaptively adjust the precision of site-specific unmodeled errors. The proposed method is tested in single-point positioning (SPP) and code real-time differenced (RTD) positioning by static and kinematic datasets. Results indicate that the adaptive model is superior to the equal-weight, elevation and C/N0 models. Compared with these traditional approaches, the accuracy of SPP and RTD solutions are improved by 35.1% and 17.6% on average in the dense high-rise building group, as well as 11.4% and 11.9% on average in the urban-forested area. This demonstrates the benefit to code-based positioning brought by a real-time adaptive weighting model as it can mitigate the impacts of site-specific unmodeled errors and improve the positioning accuracy.


2021 ◽  
Author(s):  
Ramien Sereshk

It is commonly assumed that the persistence model, using day-old monitoring results, will provide accurate estimates of real-time bacteriological concentrations in beach water. However, the persistence model frequently provides incorrect results. This study: 1. develops a site-specific predictive model, based on factors significantly influencing water quality at Beachway Park; 2. determines the feasibility of the site-specific predictive model for use in accurately predicting near real-time E. coli levels. A site-specific predictive model, developed for Beachway Park, was evaluated and the results were compared to the persistence model. This critical performance evaluation helped to identify the inherent inaccuracy of the persistence model for Beachway Park, which renders it an unacceptable approach for safeguarding public health from recreational water-borne illnesses. The persistence model, supplemented with a site-specific predictive model, is recommended as a feasible method to accurately predict bacterial levels in water on a near real-time basis.


2021 ◽  
Vol 36 (Supplement_1) ◽  
Author(s):  
E Shalom-Paz ◽  
A Bilgory ◽  
N Aslih ◽  
Y Atzmon ◽  
Y Shibli ◽  
...  

Abstract Study question Can we develop a real-time diagnostic tool for chronic endometritis (CE) by using attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy to evaluate biopsies obtained during hysteroscopy? Summary answer A discrimination model based on the absorbance data was developed by machine learning techniques, differentiating between positive and negative CE histopathology with 97% accuracy. What is known already CE is diagnosed in approximately 15% of infertile women who undergo in vitro fertilization (IVF), in 42% of women with recurrent implantation failure (RIF), and in 57.8% of women with RPL. Diagnosis is done by endometrial biopsy, and the presence of plasma cells in the endometrial stroma is the generally accepted histological diagnostic criterion. However, the histological detection of CE is time-consuming and difficult. ATR-FTIR spectroscopy is a non-destructive method that can provide valuable information on biochemical changes that occur during pathological processes, such as inflammation and cancer. Study design, size, duration We performed a prospective study in which fresh biopsies of endometrium were obtained during standard hysteroscopies. Each biopsy was examined by the spectrophotometer and afterward by histopathological analysis in which multiple myeloma oncogene 1 (MUM–1) staining for plasma cells, a marker of CE, was performed. We planned to investigate 80 samples to develop a discrimination model, and another 40 samples for validation of the model. The study was planned to last two years. Participants/materials, setting, methods Women that underwent hysteroscopy as a part of infertility evaluation were recruited. The hysteroscopies and the biopsy evaluation were performed at the same center. A cut-off of 8 MUM–1 positive cells per 10 high power fields (HPF) was set. We compared the spectroscopy analysis of the positive CE group (≥8) and the negative CE group (<8). Machine learning technique was utilized to build discrimination models. Data analysis was performed using Matlab and Unscrambler software packages. Main results and the role of chance We present preliminary results for our study. Forty-two women were recruited from January 2020 until November 2020. Of the 42 measured spectra, three were discarded due to high measurement noise. Of the 39 biopsies, 33 had MUM–1<8 (CE negative group) and 6 had MUM–1≥8 (CE positive group). Measured spectra of tissue smears from CE negative and positive groups differed from each other in the spectral range of 850–990 [cm–1] (p < 0.05). This wavenumber can be associated with the C-H in-plane bend in the alkene group (CnH2n). A discriminant model was developed between the groups using the Principal Component Analysis and Linear Discriminant Analysis techniques. The accuracy obtained by the model was 97%. We divided the 39 hysteroscopies based on the CE signs into 2 groups: “Negative hysteroscopic-CE” and “Positive hysteroscopic-CE”. Positive hysteroscopic signs were micropolyps, strawberry pattern, hyperemia, punctuation, or pale endometrium. Twenty-three samples were taken in the Negative group and 16 samples were taken in the Positive group. However, measured spectra of tissue smears from negative and positive hysteroscopy groups were not significantly different. The correlation coefficient between hysteroscopy groups and MUM–1 score was r = 0.29, meaning that the characteristic signs of CE in hysteroscopy were not correlated to the histopathology. Limitations, reasons for caution First, these are preliminary results and we need to investigate more samples to validate our model. Second, diagnostic criteria for CE are diverse in the literature and we chose 8 MUM–1 positive cells in 10 HPF, a criterion which may not be accepted by all experts in the field. Wider implications of the findings: ATR-FTIR spectroscopy is highly sensitive to molecular changes and has been utilized as a diagnostic tool in a variety of clinical studies. While histopathological results take about two weeks, ATR-FTIR spectroscopy might give us the possibility to diagnose CE in real-time, allowing an immediate initiation of the appropriate treatment. Trial registration number ClinicalTrials.gov Identifier: NCT04197167


Author(s):  
Frederico Dinis

Aiming to explore the diverse nature of sound and image, thereby establishing a bridge with the symbiotic creation of sensations and emotions, this chapter intends to present the development and the construction of a proposal for the confluence between materiality and immateriality in site-specific sound and visual performances. Using as a focal point sound and visual narratives, the author tries to look beyond space and time and create a representative atmosphere of sense of place, attempting to understand the past and sketching new configurations for the (re)presentation of identity, guiding the audience through a journey of perceptual experiences, using field recordings, ambient electronic music, and videos. This chapter also presents the development of an experimental approach, based on a real-time sound and visual performance, and some critical forms of expression and communication that relate or incorporate sound and image, articulating concerns about their aesthetic experience and communicative functionality.


2020 ◽  
Vol 31 (13) ◽  
pp. 1425-1436 ◽  
Author(s):  
Ellen Youngsoo Rim ◽  
Leigh Katherine Kinney ◽  
Roeland Nusse

A novel tool for quantitative, real-time assessment of Wnt pathway activation was combined with genetic disruption of endocytosis to determine whether receptor endocytosis is required for Wnt signal transduction. Our results in multiple cell lines support that clathrin- or caveolin-mediated endocytosis is dispensable for Wnt signal transduction.


2016 ◽  
Vol 110 (3) ◽  
pp. 145a
Author(s):  
Erik G. Hedlund ◽  
Sviatlana Shashkova ◽  
Adam J.M. Wollman ◽  
Stefan Hohmann ◽  
Mark C. Leake

2008 ◽  
Vol 7 (5) ◽  
pp. 409-414 ◽  
Author(s):  
Gunnar Myhr

The primary objective of this analysis is to provide the theoretical framework for a novel multimodal cancer treatment system emphasizing the use of ultrasound as a synergistic drug release mechanism, real time monitoring by MRI of hyperthermic, pO2, and ultrasound induced released effects. The aim is to provide a cure for the 20% of cancer victims who will die of complications from local solid tumors. Adjuvant therapy usually refers to surgery preceding or following chemotherapy and/or ionizing radiation treatment to decrease the risk of recurrence, but the absolute benefit for survival obtained with adjuvant therapy compared to control is only approximately 6%. Tumor hypoxia represents a primary therapeutic concern, besides multi-drug resistance (MDR), because it can reduce the effectiveness of drugs and radiotherapy; well-oxygenated cells require one-third the dose of hypoxic cells to achieve a given level of cell killing. The era of systemic and indiscriminate chemotherapeutic drug delivery into both healthy and pathologic tissues is near an end. Targeted drug delivery using nanoparticles is emerging as the new vehicle, either as a single treatment option, as part of adjuvant procedures or as a component of a multimodal cancer treatment system. There are more than 100 nanosized liposomes or particles, and conjugated anticancer agents in various stages of preclinical and clinical development. Active targeting can be achieved by site-specific delivery or site-specific triggering. Ultrasound can be utilized as both a site triggering and synergistic mechanism in drug release. The process can be monitored using MRI by a physical process called cavitation. An analysis of low frequency ultrasound exposure in combination with liposomally encapsulated doxorubicin (Caelyx) on Balb/c nude mice inoculated with a WiDr (human colon cancer) tumor cell line provided tumor growth inhibition of 30–40%. Mild hyperthermia causes mean intratumor pO2 to increase by 25% and enhances tumor radiosensitization. Hyperthermia causes the extravasation of liposome nanoparticles in deep tumor regions. Ionizing radiation improves the distribution and uptake of drugs. Liposomally encapsulated drugs and ultrasound mediated hyperthermia have been proven to circumvent MDR effects. Hyperthermic effects and pO2 monitoring of bodily fluid have been performed by MRI. It is hypothesized that increased vascularization and subsequent increase in pO2 levels to hypoxic regions, and monitoring of drug release through cavitation, can facilitate optimized real time concomitant or sequential treatments of drug therapy, hyperthermia, ionizing radiation, etc., before or after surgery. An improved therapeutic index with the use of the outlined system seems probable.


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