Impact of oxetane incorporation on the structure and stability of alpha-helical peptides

Eleanor S. Jayawant; Jonathan D. Beadle; Ina Wilkening; Piotr Raubo; Michael Shipman; Rebecca Notman; Ann M. Dixon

doi:10.1039/d0cp03818k

Impact of oxetane incorporation on the structure and stability of alpha-helical peptides

Physical Chemistry Chemical Physics ◽

10.1039/d0cp03818k ◽

2020 ◽

Vol 22 (43) ◽

pp. 25075-25083

Author(s):

Eleanor S. Jayawant ◽

Jonathan D. Beadle ◽

Ina Wilkening ◽

Piotr Raubo ◽

Michael Shipman ◽

...

Keyword(s):

Molecular Dynamics ◽

Helical Peptides ◽

Structure And Stability ◽

Alpha Helical Peptides

Here we reveal the tolerance of oxetane modification within alpha helical peptides using a combined molecular dynamics and experimental biophysics approach.

Download Full-text

69 Computational modeling and molecular optimization of stabilized alpha-helical peptides targeting NOTCH-CSL transcriptional complexes

European Journal of Cancer Supplements ◽

10.1016/s1359-6349(10)71774-2 ◽

2010 ◽

Vol 8 (7) ◽

pp. 30

Author(s):

R.E. Moellering ◽

Y. Shen ◽

O.G. Wiest ◽

J.E. Bradner ◽

G.L. Verdine

Keyword(s):

Computational Modeling ◽

Helical Peptides ◽

Transcriptional Complexes ◽

Alpha Helical Peptides

Download Full-text

Exploring the Changes in the Structure of α-Helical Peptides Adsorbed onto a Single Walled Carbon Nanotube Using Classical Molecular Dynamics Simulation

The Journal of Physical Chemistry B ◽

10.1021/jp106177n ◽

2010 ◽

Vol 114 (44) ◽

pp. 14048-14058 ◽

Cited By ~ 43

Author(s):

K. Balamurugan ◽

R. Gopalakrishnan ◽

S. Sundar Raman ◽

V. Subramanian

Keyword(s):

Molecular Dynamics ◽

Carbon Nanotube ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Helical Peptides ◽

Single Walled Carbon Nanotube ◽

Single Walled Carbon ◽

Classical Molecular Dynamics

Download Full-text

Visualizing alpha-helical peptides in R with helixvis

The Journal of Open Source Software ◽

10.21105/joss.01008 ◽

2018 ◽

Vol 3 (31) ◽

pp. 1008 ◽

Cited By ~ 2

Author(s):

Raoul Wadhwa ◽

Vigneshwar Subramanian ◽

Regina Stevens-Truss

Keyword(s):

Helical Peptides ◽

Alpha Helical Peptides

Download Full-text

1P061 High-pressure molecular dynamics study on the thermodynamics and structures of helical peptides(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s151_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S151

Author(s):

Yoshiharu Mori ◽

Hisashi Okumura

Keyword(s):

Molecular Dynamics ◽

High Pressure ◽

Annual Meeting ◽

Helical Peptides ◽

Protein Property ◽

Biophysical Society

Download Full-text

Influence of membrane-spanning alpha-helical peptides on the phase behavior of the dioleoylphosphatidylcholine/water system

Biophysical Journal ◽

10.1016/s0006-3495(97)78335-8 ◽

1997 ◽

Vol 73 (6) ◽

pp. 3078-3088 ◽

Cited By ~ 47

Author(s):

S. Morein ◽

E. Strandberg ◽

J.A. Killian ◽

S. Persson ◽

G. Arvidson ◽

...

Keyword(s):

Phase Behavior ◽

Water System ◽

Helical Peptides ◽

Membrane Spanning ◽

Alpha Helical Peptides

Download Full-text

Structure and Stability of Zeolite Offretite under Si4+/(Al3+, M+) Substitution (M = Na, K): A First Principles Molecular Dynamics Study

The Journal of Physical Chemistry ◽

10.1021/j100044a023 ◽

1995 ◽

Vol 99 (44) ◽

pp. 16351-16356 ◽

Cited By ~ 11

Author(s):

L. Campana ◽

A. Selloni ◽

J. Weber ◽

A. Goursot

Keyword(s):

Molecular Dynamics ◽

First Principles ◽

Structure And Stability ◽

First Principles Molecular Dynamics

Download Full-text

Molecular dynamics of the structural changes of helical peptides induced by pressure

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24654 ◽

2014 ◽

Vol 82 (11) ◽

pp. 2970-2981 ◽

Cited By ~ 9

Author(s):

Yoshiharu Mori ◽

Hisashi Okumura

Keyword(s):

Molecular Dynamics ◽

Structural Changes ◽

Helical Peptides

Download Full-text

Effect of the aminoacid composition of model α-helical peptides on the physical properties of lipid bilayers and peptide conformation: a molecular dynamics simulation

Journal of Molecular Modeling ◽

10.1007/s00894-012-1550-9 ◽

2012 ◽

Vol 19 (11) ◽

pp. 4723-4730 ◽

Cited By ~ 2

Author(s):

Milan Melicherčík ◽

Alžbeta Holúbeková ◽

Tibor Hianik ◽

Ján Urban

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Physical Properties ◽

Lipid Bilayers ◽

Peptide Conformation ◽

Dynamics Simulation ◽

Helical Peptides

Download Full-text

Abstract 5235: Affecting activity of the linear ubiquitin chain assembly complex (LUBAC) with stapled alpha-helical peptides

10.1158/1538-7445.am2017-5235 ◽

2017 ◽

Author(s):

Amanda L. Whiting ◽

Francisco Aguilar-Alonso ◽

Joseph J. Mitala ◽

Federico Bernal

Keyword(s):

Ubiquitin Chain ◽

Helical Peptides ◽

Alpha Helical Peptides

Download Full-text

Structure and Stability of Amyloid Protofibrils of Polyglutamine and Polyasparagine from Molecular Dynamics Simulations

Biomolecular Simulations in Structure-Based Drug Discovery - Methods and Principles in Medicinal Chemistry ◽

10.1002/9783527806836.ch12 ◽

2018 ◽

pp. 301-324

Author(s):

Viet Hoang Man ◽

Yuan Zhang ◽

Christopher Roland ◽

Celeste Sagui

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Structure And Stability ◽

Dynamics Simulations

Download Full-text