Exploration of the theobromine–water dimer: comparison with DNA microhydration

2020 ◽  
Vol 22 (27) ◽  
pp. 15759-15768
Author(s):  
Imanol Usabiaga ◽  
Ander Camiruaga ◽  
Camilla Calabrese ◽  
Antonio Veloso ◽  
Viola C. D’mello ◽  
...  

Exploration of the microhydration of theobromine using laser spectroscopy in jets and DFT calculations shows very similar structures and binding energies to those for microhydration of nucleobases.

2016 ◽  
Vol 18 (18) ◽  
pp. 12457-12465 ◽  
Author(s):  
Imanol Usabiaga ◽  
Jorge González ◽  
Pedro F. Arnáiz ◽  
Iker León ◽  
Emilio J. Cocinero ◽  
...  

We present here the structure of glucopyranoe–phenol complexes, as revealed by mass-resolved laser spectroscopy and DFT calculations.


2020 ◽  
Vol 22 (3) ◽  
pp. 976-980
Author(s):  
Wei-Wei Wang ◽  
Fu-Lin Shang ◽  
Xiang Zhao

DFT calculations were performed to study the host–guest chemistry of a new class of basket-shaped fullerene receptors with strong binding energies and flexible carbon skeletons.


2015 ◽  
Vol 68 (9) ◽  
pp. 1385 ◽  
Author(s):  
Jiawei Li ◽  
George N. Khairallah ◽  
Richard A. J. O'Hair

Gas-phase experiments using collision-induced dissociation in an ion trap mass spectrometer have been used in combination with density functional theory (DFT) calculations (at the B3LYP/SDD6–31+G(d) level of theory) to examine the competition between decarboxylation and loss of a coordinated acetonitrile in the unimolecular fragmentation reactions of the silver acetate and silver propiolate complexes, [RCO2Ag2(CH3CN)n]+ (where R = CH3 and CH3C≡C; n = 1 and 2), introduced into the gas-phase via electrospray ionisation. When R = CH3, loss of acetonitrile is the sole reaction channel observed for both complexes (n = 1 and 2), consistent with DFT calculations, which highlight that the barriers for decarboxylation 2.18 eV (n = 2) and 1.96 eV (n = 1) are greater than the binding energies of the coordinated acetonitriles (1.60 eV for n = 2; 1.64 eV for n = 1). In contrast, when R = CH3C≡C, decarboxylation is the main fragmentation pathway observed for both complexes (n = 1 and 2), with loss of acetonitrile only being a minor product channel. This is consistent with DFT calculations, which reveal that the barriers for decarboxylation are 1.17 eV (n = 2) and 1.16 eV (n = 1), which are both below the binding energies of the coordinated acetonitriles (1.55 eV for n = 2; 1.56 eV for n = 1). The barrier for decarboxylation of [CH3C≡CCO2Ag2]+ is 1.22 eV, which is less than the 2.06 eV reported for decarboxylation of [CH3CO2Ag2]+ (Al Sharif et al. Organometallics, 2013, 32, 5416). The observed ease of decarboxylation of silver propiolate complexes in the gas-phase is consistent with the recently reported use of silver salts in metal catalysed decarboxylative C–C and C–X bond forming reactions of propiolic acids.


2014 ◽  
Vol 67 (3) ◽  
pp. 426 ◽  
Author(s):  
Robert Kalescky ◽  
Wenli Zou ◽  
Elfi Kraka ◽  
Dieter Cremer

The water dimer and its 11 deuterated isotopomers are investigated utilizing coupled cluster theory and experimental data as input for a perturbational determination of the isotopomer frequencies. Deuterium substitution reduces the H-bond stretching frequency by maximally 12 cm–1 from 143 to 131 cm–1, which makes a spectroscopic differentiation of H- and D-bonds difficult. However, utilizing the 132 frequencies obtained in this work, the identification of all isotopomers is straightforward. The CCSD(T)/CBS value of the binding energy De is 5.00 kcal mol–1. The binding energy D0 of the water dimer increases upon deuterium substitution from 3.28 to maximally 3.71 kcal mol–1 reflecting a decrease in the zero point energy contribution. The entropy values of the D-isotopomers increase from 73 to 77 entropy units in line with the general observation that a mass increase leads to larger entropies. All 12 isotopomers possess positive free binding energies at 80 K and a reduced pressure of 110 Pa, which means that they can be spectroscopically observed under these conditions.


2015 ◽  
Vol 21 (18) ◽  
pp. 6637-6637 ◽  
Author(s):  
Jan Řezáč ◽  
Dana Nachtigallová ◽  
Federico Mazzoni ◽  
Massimiliano Pasquini ◽  
Giangaetano Pietraperzia ◽  
...  

1995 ◽  
Vol 52 (4) ◽  
pp. R2508-R2510 ◽  
Author(s):  
P. Kristensen ◽  
V. V. Petrunin ◽  
H. H. Andersen ◽  
T. Andersen

2021 ◽  
Author(s):  
William Kerr ◽  
Gary J. Knox ◽  
Marc Reid ◽  
Tell Tuttle

<div>Remote directing groups in a bifunctional molecule do not always behave independently of one another in C–H activation chemistries. A combined DFT and experimental mechanistic study to provide enhanced Ir catalysts for chemoselective C–H deuteration of bifunctional aryl primary sulfonamides is described. This provides a pharmaceutically relevant and limiting case study in using binding energies to predict intramolecular directing group chemoselectivity. Rational catalyst design, guided solely by qualitative substrate-catalyst binding free energy predictions, enabled intramolecular discrimination between competing ortho directing groups in C–H activation and delivered improved catalysts for sulfonamide-selective C–H deuteration. As a result, chemoselective binding of the primary sulfonamide moiety was achieved in the face of an intrinsically more powerful pyrazole directing group present in the same molecule. Detailed DFT calculations and mechanistic experiments revealed a breakdown in the applied binding free energy model, illustrating the important interconnectivity of ligand design, substrate geometry, directing group cooperativity, and solvation in supporting DFT calculations. This work has important implications around attempts to predict intramolecular C–H activation directing group chemoselectivity using simplified monofunctional fragment molecules. More generally, these studies provide insights for catalyst design methods for late-stage C–H functionalisation.</div>


CrystEngComm ◽  
2016 ◽  
Vol 18 (18) ◽  
pp. 3273-3281 ◽  
Author(s):  
Andrew G. P. Maloney ◽  
Peter A. Wood ◽  
Simon Parsons

The PIXEL method can be applied to MOFs, yielding binding energies and optimised guest locations similar to more costly DFT calculations.


2000 ◽  
Vol 112 (23) ◽  
pp. 10293-10313 ◽  
Author(s):  
L. B. Braly ◽  
J. D. Cruzan ◽  
K. Liu ◽  
R. S. Fellers ◽  
R. J. Saykally

2015 ◽  
Vol 21 (18) ◽  
pp. 6633-6633
Author(s):  
Jan Řezáč ◽  
Dana Nachtigallová ◽  
Federico Mazzoni ◽  
Massimiliano Pasquini ◽  
Giangaetano Pietraperzia ◽  
...  

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