A modular microscopic smartphone attachment for imaging and quantification of multiple fluorescent probes using machine learning

Muhammad A. Sami; Muhammad Tayyab; Priya Parikh; Harshitha Govindaraju; Umer Hassan

doi:10.1039/d0an02451a

A modular microscopic smartphone attachment for imaging and quantification of multiple fluorescent probes using machine learning

The Analyst ◽

10.1039/d0an02451a ◽

2021 ◽

Vol 146 (8) ◽

pp. 2531-2541

Author(s):

Muhammad A. Sami ◽

Muhammad Tayyab ◽

Priya Parikh ◽

Harshitha Govindaraju ◽

Umer Hassan

Keyword(s):

Machine Learning ◽

Fluorescent Probes ◽

Fluorescent Microscope

A smartphone-based fluorescent microscope capable of imaging multiple fluorescent probes at different magnification levels.

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Rapid imaging, detection and quantification of Giardia lamblia cysts using mobile-phone based fluorescent microscopy and machine learning

Lab on a Chip ◽

10.1039/c4lc01358a ◽

2015 ◽

Vol 15 (5) ◽

pp. 1284-1293 ◽

Cited By ~ 114

Author(s):

Hatice Ceylan Koydemir ◽

Zoltan Gorocs ◽

Derek Tseng ◽

Bingen Cortazar ◽

Steve Feng ◽

...

Keyword(s):

Machine Learning ◽

Mobile Phone ◽

Water Samples ◽

Giardia Lamblia ◽

Fluorescent Microscopy ◽

Rapid Imaging ◽

Fluorescent Microscope ◽

Imaging Detection ◽

Detection And Quantification

We report a mobile-phone based fluorescent microscope that uses machine learning to rapidly image, detect and quantify Giardia lamblia cysts in water samples.

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Mind wandering as data augmentation: How mental travel supports abstraction

Behavioral and Brain Sciences ◽

10.1017/s0140525x1900311x ◽

2020 ◽

Vol 43 ◽

Author(s):

Myrthe Faber

Keyword(s):

Machine Learning ◽

Data Augmentation ◽

Mental Content ◽

Mind Wandering ◽

Theoretical Framework ◽

Important Addition

Abstract Gilead et al. state that abstraction supports mental travel, and that mental travel critically relies on abstraction. I propose an important addition to this theoretical framework, namely that mental travel might also support abstraction. Specifically, I argue that spontaneous mental travel (mind wandering), much like data augmentation in machine learning, provides variability in mental content and context necessary for abstraction.

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Confocal microscopy of the cytoskeleton in living plant cells following microinjection of fluorescent probes

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100146497 ◽

1993 ◽

Vol 51 ◽

pp. 130-131

Author(s):

Ann Cleary

Keyword(s):

Cell Division ◽

Fluorescent Probes ◽

Actin Filaments ◽

Intracellular Transport ◽

Cell Structure ◽

Plant Cells ◽

Cell Plate ◽

Cell Cortex ◽

Living Plant ◽

Rhodamine Phalloidin

Microinjection of fluorescent probes into living plant cells reveals new aspects of cell structure and function. Microtubules and actin filaments are dynamic components of the cytoskeleton and are involved in cell growth, division and intracellular transport. To date, cytoskeletal probes used in microinjection studies have included rhodamine-phalloidin for labelling actin filaments and fluorescently labelled animal tubulin for incorporation into microtubules. From a recent study of Tradescantia stamen hair cells it appears that actin may have a role in defining the plane of cell division. Unlike microtubules, actin is present in the cell cortex and delimits the division site throughout mitosis. Herein, I shall describe actin, its arrangement and putative role in cell plate placement, in another material, living cells of Tradescantia leaf epidermis.The epidermis is peeled from the abaxial surface of young leaves usually without disruption to cytoplasmic streaming or cell division. The peel is stuck to the base of a well slide using 0.1% polyethylenimine and bathed in a solution of 1% mannitol +/− 1 mM probenecid.

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Routine Digital Processing of Microscope Images

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100181506 ◽

1990 ◽

Vol 48 (1) ◽

pp. 550-551

Author(s):

E. Wisse ◽

A. Geerts ◽

R.B. De Zanger

Keyword(s):

Operating System ◽

Digital Processing ◽

Hard Disks ◽

The Sun ◽

Tape Drive ◽

High Definition ◽

Fluorescent Microscope ◽

Microscope Images ◽

Helical Scan ◽

Ethernet Connection

The slowscan and TV signal of the Philips SEM 505 and the signal of a TV camera attached to a Leitz fluorescent microscope, were digitized by the data acquisition processor of a Masscomp 5520S computer, which is based on a 16.7 MHz 68020 CPU with 10 Mb RAM memory, a graphics processor with two frame buffers for images with 8 bit / 256 grey values, a high definition (HD) monitor (910 × 1150), two hard disks (70 and 663 Mb) and a 60 Mb tape drive. The system is equipped with Imaging Technology video digitizing boards: analog I/O, an ALU, and two memory mapped frame buffers for TV images of the IP 512 series. The Masscomp computer has an ethernet connection to other computers, such as a Vax PDP 11/785, and a Sun 368i with a 327 Mb hard disk and a SCSI interface to an Exabyte 2.3 Gb helical scan tape drive. The operating system for these computers is based on different versions of Unix, such as RTU 4.1 (including NFS) on the acquisition computer, bsd 4.3 for the Vax, and Sun OS 4.0.1 for the Sun (with NFS).

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Live Confocal Analysis of Fertilization and Early Development

Microscopy and Microanalysis ◽

10.1017/s1431927600031135 ◽

2001 ◽

Vol 7 (S2) ◽

pp. 1012-1013

Author(s):

Uyen Tram ◽

William Sullivan

Keyword(s):

Drosophila Melanogaster ◽

Embryonic Development ◽

Real Time ◽

Early Development ◽

Fluorescent Probes ◽

Primary Defect ◽

Fluorescent Analysis ◽

Dynamic Event ◽

Enormous Amount ◽

Fluorescent Studies

Embryonic development is a dynamic event and is best studied in live animals in real time. Much of our knowledge of the early events of embryogenesis, however, comes from immunofluourescent analysis of fixed embryos. While these studies provide an enormous amount of information about the organization of different structures during development, they can give only a static glimpse of a very dynamic event. More recently real-time fluorescent studies of living embryos have become much more routine and have given new insights to how different structures and organelles (chromosomes, centrosomes, cytoskeleton, etc.) are coordinately regulated. This is in large part due to the development of commercially available fluorescent probes, GFP technology, and newly developed sensitive fluorescent microscopes. For example, live confocal fluorescent analysis proved essential in determining the primary defect in mutations that disrupt early nuclear divisions in Drosophila melanogaster. For organisms in which GPF transgenics is not available, fluorescent probes that label DNA, microtubules, and actin are available for microinjection.

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