A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction

R. Vasan; S. Rudraraju; M. Akamatsu; K. Garikipati; P. Rangamani

doi:10.1039/c9sm01494b

A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction

Soft Matter ◽

10.1039/c9sm01494b ◽

2020 ◽

Vol 16 (3) ◽

pp. 784-797 ◽

Cited By ~ 3

Author(s):

R. Vasan ◽

S. Rudraraju ◽

M. Akamatsu ◽

K. Garikipati ◽

P. Rangamani

Keyword(s):

Computational Modeling ◽

Mechanical Model ◽

Energy Barrier ◽

Neck Formation ◽

Axisymmetric Buckling

Using computational modeling, we show that membrane neck formation, which is essential for scission can be both location and symmetry dependent.

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A mechanical model reveals that non-axisymmetric buckling lowers the energy barrier associated with membrane neck constriction

10.1101/672485 ◽

2019 ◽

Author(s):

R. Vasan ◽

S. Rudraraju ◽

M. Akamatsu ◽

K. Garikipati ◽

P. Rangamani

Keyword(s):

Membrane Trafficking ◽

Mechanical Model ◽

Isogeometric Analysis ◽

Energy Barrier ◽

Molecular Mechanisms ◽

Cellular Membrane ◽

Membrane Mechanics ◽

Neck Formation ◽

Energy Barriers ◽

Symmetry Constraints

AbstractMembrane neck formation is essential for scission, which, as recent experiments on tubules have demonstrated, can be location dependent. The diversity of biological machinery that can constrict a neck such as dynamin, actin, ESCRTs and BAR proteins, and the range of forces and deflection over which they operate, suggest that the constriction process is functionally mechanical and robust to changes in biological environment. In this study, we used a mechanical model of the lipid bilayer to systematically investigate the influence of location, symmetry constraints, and helical forces on membrane neck constriction. Simulations from our model demonstrated that the energy barriers associated with constriction of a membrane neck are location-dependent. Importantly, if symmetry restrictions are relaxed, then the energy barrier for constriction is dramatically lowered and the membrane buckles at lower values of forcing parameters. Our simulations also show that constriction due to helical proteins further reduces the energy barrier for neck formation compared to cylindrical proteins. These studies establish that despite different molecular mechanisms of neck formation in cells, the mechanics of constriction naturally leads to a loss of symmetry that can lower the energy barrier to constriction.Significance statementMembrane tubule constriction is a critical step of cellular membrane trafficking processes and is thought to be mechanically regulated. Mechanical modeling techniques employing the Helfrich Hamiltonian and axisymmetric continuum frameworks have previously described energy barriers to constriction as a function of location along a 26 membrane tubule. Recent advances in numerical modeling using spline basis functions (Isogeometric Analysis) enable us to conduct our analyses of membrane mechanics in a generalized 3D framework. Here, we implement a novel 3D Isogeometric Analysis framework and juxtapose it against an axisymmetric model to study the influence of location, symmetry constraints and helical collars on the constriction pathway. We show that an unsymmetric, “crushed soda can” neck consistently displays a lower energy barrier than a symmetric neck.

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