scholarly journals Glassy dynamics in models of confluent tissue with mitosis and apoptosis

Soft Matter ◽  
2019 ◽  
Vol 15 (44) ◽  
pp. 9133-9149 ◽  
Author(s):  
Michael Czajkowski ◽  
Daniel M. Sussman ◽  
M. Cristina Marchetti ◽  
M. Lisa Manning
Keyword(s):  
Cell Death ◽  
Life Cycle ◽  
Cell Division ◽  
Epithelial Tissue ◽  
Vertex Model ◽  
Glassy Dynamics ◽  
Cell Life ◽  
Active Vertex

Using a new Active Vertex Model of confluent epithelial tissue, we investigate the effect of cell division and cell death on previously identified glassy dynamics and establish how fast the cell life cycle must be in order to disrupt the observed dynamical signatures of glass-like behavior.

scholarly journals Active Vertex Model for Cell-Resolution Description of Epithelial Tissue Mechanics

2016 ◽  
Author(s):  
Daniel L. Barton ◽  
Silke Henkes ◽  
Cornelis J. Weijer ◽  
Rastko Sknepnek
Keyword(s):  
Multiple Scales ◽  
Tissue Mechanics ◽  
Epithelial Tissue ◽  
Vertex Model ◽  
Cell Alignment ◽  
Motion Patterns ◽  
Epithelial Tissues ◽  
Cell Motion ◽  
Natural Description ◽  
Active Vertex

We introduce an Active Vertex Model (AVM) for cell-resolution studies of the mechanics of confluent epithelial tissues consisting of tens of thousands of cells, with a level of detail inaccessible to similar methods. The AVM combines the Vertex Model for confluent epithelial tissues with active matter dynamics. This introduces a natural description of the cell motion and accounts for motion patterns observed on multiple scales. Furthermore, cell contacts are generated dynamically from positions of cell centres. This not only enables efficient numerical implementation, but provides a natural description of the T1 transition events responsible for local tissue rearrangements. The AVM also includes cell alignment, cell-specific mechanical properties, cell growth, division and apoptosis. In addition, the AVM introduces a flexible, dynamically changing boundary of the epithelial sheet allowing for studies of phenomena such as the fingering instability or wound healing. We illustrate these capabilities with a number of case studies.

scholarly journals Active Vertex Model for cell-resolution description of epithelial tissue mechanics

2017 ◽  
Vol 13 (6) ◽  
pp. e1005569 ◽  
Author(s):  
Daniel L. Barton ◽  
Silke Henkes ◽  
Cornelis J. Weijer ◽  
Rastko Sknepnek
Keyword(s):  
Tissue Mechanics ◽  
Epithelial Tissue ◽  
Vertex Model ◽  
Active Vertex

The logic of cell division in the life cycle of yeast

Science ◽  
1992 ◽  
Vol 257 (5070) ◽  
pp. 626-626 ◽  
Author(s):  
C. Gimeno ◽  
G. Fink
Keyword(s):  
Life Cycle ◽  
Cell Division

scholarly journals Cell Elongation and Cell Death ofHelicobacter pyloriIs Modulated by the Disruption ofcdrA(Cell Division-Related Gene A)

2006 ◽  
Vol 50 (7) ◽  
pp. 487-497 ◽  
Author(s):  
Hiroaki Takeuchi ◽  
Teruko Nakazawa ◽  
Takeshi Okamoto ◽  
Mutsunori Shirai ◽  
Mitsuo Kimoto ◽  
...  
Keyword(s):  
Cell Death ◽  
Cell Division ◽  
Cell Elongation ◽  
Related Gene

A group of genes required for maintenance of the amnioserosa tissue in Drosophila

Development ◽  
1996 ◽  
Vol 122 (5) ◽  
pp. 1343-1352 ◽  
Author(s):  
L.H. Frank ◽  
C. Rushlow
Keyword(s):  
Cell Death ◽  
Cell Loss ◽  
Dorsal Side ◽  
Drosophila Embryo ◽  
Epithelial Tissue ◽  
Dorsoventral Patterning ◽  
Wild Type ◽  
Germ Band ◽  
Initial Development

The amnioserosa is an extraembryonic, epithelial tissue that covers the dorsal side of the Drosophila embryo. The initial development of the amnioserosa is controlled by the dorsoventral patterning genes. Here we show that a group of genes, which we refer to as the U-shaped-group (ush-group), is required for maintenance of the amnioserosa tissue once it has differentiated. Using several molecular markers, we examined amnioserosa development in the ush-group mutants: u-shaped (ush), hindsight (hnt), serpent (srp) and tail-up (tup). Our results show that the amnioserosa in these mutants is specified correctly and begins to differentiate as in wild type. However, following germ-band extension, there is a premature loss of the amnioserosa. We demonstrate that this cell loss is a consequence of programmed cell death (apoptosis) in ush, hnt and srp, but not in tup. We discuss the role of the ush-group genes in maintaining the amnioserosa's viability. We also discuss a possible role for the amnioserosa in germ-band retraction in light of these mutants' unretracted phenotype.

Xylogenesis in Trees: From Cambial Cell Division to Cell Death

2016 ◽  
pp. 25-43 ◽  
Author(s):  
Ryo Funada ◽  
Yusuke Yamagishi ◽  
Shahanara Begum ◽  
Kayo Kudo ◽  
Eri Nabeshima ◽  
...  
Keyword(s):  
Cell Death ◽  
Cell Division ◽  
Cambial Cell

scholarly journals Role of two metacaspases in development and pathogenicity of the Rice Blast fungus, Magnaporthe oryzae

2020 ◽  
Author(s):  
Jessie Fernandez ◽  
Victor Lopez ◽  
Lisa Kinch ◽  
Mariel A. Pfeifer ◽  
Hillery Gray ◽  
...  
Keyword(s):  
Cell Death ◽  
Food Security ◽  
Life Cycle ◽  
Magnaporthe Oryzae ◽  
Rice Blast ◽  
Rice Blast Disease ◽  
Blast Disease ◽  
Complex Life Cycle ◽  
Insight Into

ABSTRACTRice blast disease caused by Magnaporthe oryzae is a devastating disease of cultivated rice worldwide. Infections by this fungus lead to a significant reduction in rice yields and threats to food security. To gain better insight into growth and cell death in M. oryzae during infection, we characterized two predicted M. oryzae metacaspase proteins, MoMca1 and MoMca2. These proteins appear to be functionally redundant and are able to complement the yeast Yca1 homologue. Biochemical analysis revealed that M. oryzae metacaspases exhibited Ca2+ dependent caspase activity in vitro. Deletion of both MoMca1 and MoMca2 in M. oryzae resulted in reduced sporulation, delay in conidial germination and attenuation of disease severity. In addition, the double ΔMomca1mca2 mutant strain showed increased radial growth in the presence of oxidative stress. Interestingly, the ΔMomca1mca2 strain showed an increase accumulation of insoluble aggregates compared to the wild-type strain during vegetative growth. Our findings suggest that MoMca1 and MoMca2 promote the clearance of insoluble aggregates in M. oryzae, demonstrating the important role these metacaspases have in fungal protein homeostasis. Furthermore, these metacaspase proteins may play additional roles, like in regulating stress responses, that would help maintain the fitness of fungal cells required for host infection.IMPORTANCEMagnaporthe oryzae causes rice blast disease that threatens global food security by resulting in the severe loss of rice production every year. A tightly regulated life cycle allows M. oryzae to disarm the host plant immune system during its biotrophic stage before triggering plant cell death in its necrotrophic stage. The ways M. oryzae navigates its complex life cycle remains unclear. This work characterizes two metacaspase proteins with peptidase activity in M. oryzae that are shown to be involved in the regulation of fungal growth and development prior to infection by potentially helping maintain fungal fitness. This study provides new insight into the role of metacaspase proteins in filamentous fungi by illustrating the delays in M. oryzae morphogenesis in the absence of these proteins. Understanding the mechanisms by which M. oryzae morphology and development promote its devastating pathogenicity may lead to the emergence of proper methods for disease control.

scholarly journals Theoretical Analysis of S, M and N Structural Proteins by the Protein–RNA Recognition Code Leads to Genes/proteins that Are Relevant to the SARS-CoV-2 Life Cycle and Pathogenesis

2021 ◽  
Vol 12 ◽  
Author(s):  
Jozef Nahalka
Keyword(s):  
Life Cycle ◽  
Transcriptional Repression ◽  
Lipid Homeostasis ◽  
Epithelial Tissue ◽  
Rna Recognition ◽  
Review Of Literature ◽  
Recognition Code ◽  
Host Genes

In this conceptual review, based on the protein–RNA recognition code, some theoretical sequences were detected in the spike (S), membrane (M) and capsid (N) proteins that may post-transcriptionally regulate the host genes/proteins in immune homeostasis, pulmonary epithelial tissue homeostasis, and lipid homeostasis. According to the review of literature, the spectrum of identified genes/proteins shows that the virus promotes IL1α/β–IL1R1 signaling (type 1 immunity) and immunity defense against helminths and venoms (type 2 immunity). In the alteration of homeostasis in the pulmonary epithelial tissue, the virus blocks the function of cilia and the molecular programs that are involved in wound healing (EMT and MET). Additionally, the protein–RNA recognition method described here identifies compatible sequences in the S1A-domain for the post-transcriptional promotion of PIKFYVE, which is one of the critical factors for SARS-CoV-2 entry to the host cell, and for the post-transcriptional repression of xylulokinase XYLB. A decrease in XYLB product (Xu5P) in plasma was proposed as one of the potential metabolomics biomarkers of COVID-19. In summary, the protein–RNA recognition code leads to protein genes relevant to the SARS-CoV-2 life cycle and pathogenesis.

scholarly journals Plasmodium Kinesin-8X associates with mitotic spindles and is essential for oocyst development during parasite proliferation and transmission

2019 ◽  
Author(s):  
Mohammad Zeeshan ◽  
Fiona Shilliday ◽  
Tianyang Liu ◽  
Steven Abel ◽  
Tobias Mourier ◽  
...  
Keyword(s):  
Life Cycle ◽  
Cell Division ◽  
Gene Targeting ◽  
Intracellular Transport ◽  
Regulation Of Gene Expression ◽  
Microtubule Depolymerization ◽  
Expression Of Genes ◽  
Genome Wide ◽  
Spindle Dynamics ◽  
Chromosome Alignment

AbstractKinesin-8 proteins are microtubule motors that are often involved in regulation of mitotic spindle length and chromosome alignment. They move towards the ends of spindle microtubules and regulate the dynamics of these ends due, at least in some species, to their microtubule depolymerization activity. Plasmodium spp. exhibit an atypical endomitotic cell division in which chromosome condensation and spindle dynamics are not well understood in the different proliferative stages. Genome-wide homology analysis of Plasmodium spp. revealed the presence of two Kinesin-8 motor proteins (Kinesin-8X and Kinesin-8B). Here we have studied the biochemical properties of Kinesin-8X and its role in parasite proliferation. In vitro, Kinesin-8X showed motile and depolymerization activities like other Kinesin-8 motors. To understand its role in cell division, we have used protein tagging and live cell imaging to define the location of Plasmodium Kinesin-8X during all proliferative stages of the P berghei life cycle. Furthermore, we have used gene targeting to analyse the function of Kinesin-8X. The results reveal a spatio-temporal involvement of Kinesin-8X in spindle dynamics and its association with both mitotic and meiotic spindles and the putative microtubule organising centre (MTOC). Deletion of the Kinesin-8X gene showed that this protein is required for endomitotic division during oocyst development and is therefore necessary for parasite replication within the mosquito gut, and for transmission to the vertebrate host. Consistently, transcriptome analysis of Δkinesin-8X parasites reveals modulated expression of genes involved mainly in microtubule-based processes, chromosome organisation and the regulation of gene expression supporting a role in cell division.Author SummaryKinesins are microtubule-based motors that play key roles in intracellular transport, cell division and motility. Members of the Kinesin-8 family contribute to chromosome alignment during cell division in many eukaryotes. However, the roles of kinesins in the atypical cell division in Plasmodium, the causative agent of malaria, is not known. In contrast to many other eukaryotes, Plasmodium proliferates by endomitosis, in which genome replication and division occur within a nucleus bounded by a persistent nuclear envelope. We show that the Plasmodium genome encodes only nine kinesins and we further investigate the role of Kinesin-8X throughout the Plasmodium life cycle using biochemical and gene targeting approaches. We show that Plasmodium Kinesin-8X has microtubule-based motility and depolymerization activity. We also show that Kinesin-8X is probably localized on putative MTOCs and spindles during cell division in most of the stages of P. berghei life cycle. By gene deletion we demonstrate that Kinesin-8X is essential for normal oocyst development and sporozoite formation. Genome-wide RNA analysis of Δkinesin-8X parasites reveals modulated expression of genes involved in microtubule-based processes. Overall, the data suggest that Kinesin-8X is a molecular motor that plays essential roles during endomitosis in oocyst development in the mosquito, contributing to parasite transmission.

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