scholarly journals Non-invasive 19F NMR analysis of a protein-templated N-acylhydrazone dynamic combinatorial library

2018 ◽  
Vol 16 (43) ◽  
pp. 8144-8149 ◽  
Author(s):  
Alexander G. Ekström ◽  
Jue Theresa Wang ◽  
Juraj Bella ◽  
Dominic J. Campopiano
Keyword(s):  
Combinatorial Chemistry ◽  
Combinatorial Library ◽  
19F Nmr ◽  
Nmr Analysis ◽  
Biological Targets ◽  
Dynamic Combinatorial Chemistry ◽  
Non Invasive ◽  
Dynamic Combinatorial Library

Dynamic combinatorial chemistry (DCC) is a powerful tool to identify ligands for biological targets.

scholarly journals Hit-Optimization Using Target-Directed Dynamic Combinatorial Chemistry: Development of Inhibitors of the Anti-Infective Target 1-Deoxy-D-Xylulose-5-Phosphate Synthase

2020 ◽  
Author(s):  
Ravindra P. Jumde ◽  
Melissa Guardigni ◽  
Robin M. Gierse ◽  
Alaa Alhayek ◽  
Di Zhu ◽  
...  
Keyword(s):  
Drug Discovery ◽  
Combinatorial Chemistry ◽  
Discovery Process ◽  
Drug Discovery Process ◽  
Biological Targets ◽  
Dynamic Combinatorial Chemistry ◽  
Structure Activity ◽  
Chemistry Development ◽  
Relationship Of ◽  
Phosphate Synthase

<p>Target-directed dynamic combinatorial chemistry (tdDCC) enables the identification, as well as optimization of ligands for un(der)explored targets such as the anti-infective target 1‑deoxy‑d‑xylulose-5-phosphate synthase (DXS). We report the unprecedented use of tdDCC to first identify and subsequently optimize inhibitors of the anti-infective target DXS. Using tdDCC, we were able to generate acylhydrazone-based inhibitors for DXS. The tailored tdDCC runs also provided insights into the structure–activity relationship of this novel class of DXS inhibitors. This approach holds the potential to expedite the drug discovery process and could be generally applied to a range of biological targets.</p>

scholarly journals Hit-Optimization Using Target-Directed Dynamic Combinatorial Chemistry: Development of Inhibitors of the Anti-Infective Target 1-Deoxy-D-Xylulose-5-Phosphate Synthase

2020 ◽  
Author(s):  
Ravindra P. Jumde ◽  
Melissa Guardigni ◽  
Robin M. Gierse ◽  
Alaa Alhayek ◽  
Di Zhu ◽  
...  
Keyword(s):  
Drug Discovery ◽  
Combinatorial Chemistry ◽  
Discovery Process ◽  
Drug Discovery Process ◽  
Biological Targets ◽  
Dynamic Combinatorial Chemistry ◽  
Structure Activity ◽  
Chemistry Development ◽  
Relationship Of ◽  
Phosphate Synthase

<p>Target-directed dynamic combinatorial chemistry (tdDCC) enables the identification, as well as optimization of ligands for un(der)explored targets such as the anti-infective target 1‑deoxy‑d‑xylulose-5-phosphate synthase (DXS). We report the unprecedented use of tdDCC to first identify and subsequently optimize inhibitors of the anti-infective target DXS. Using tdDCC, we were able to generate acylhydrazone-based inhibitors for DXS. The tailored tdDCC runs also provided insights into the structure–activity relationship of this novel class of DXS inhibitors. This approach holds the potential to expedite the drug discovery process and could be generally applied to a range of biological targets.</p>

Formation and Trapping of the Thermodynamically Unfavoured Inverted-Hemicucurbit[6]uril

2019 ◽  
Author(s):  
Elena Prigorchenko ◽  
Sandra Kaabel ◽  
Triin Narva ◽  
Anastassia Baškir ◽  
Maria Fomitšenko ◽  
...  
Keyword(s):  
Complex Formation ◽  
Combinatorial Chemistry ◽  
Trifluoroacetic Acid ◽  
Chloride Anion ◽  
Binding Affinities ◽  
Dynamic Covalent Chemistry ◽  
Reaction Selectivity ◽  
Low Concentration ◽  
Dynamic Combinatorial Chemistry ◽  
First Time

Amplification of a thermodynamically unfavoured macrocyclic product through the directed shift of the equilibrium between dynamic covalent chemistry library members is difficult to achieve. We show for the first time that during condensation of formaldehyde and <i>cis</i>-<i>N,N'</i>-cyclohexa-1,2-diylurea formation of <i>inverted-cis</i>-cyclohexanohemicucurbit[6]uril (<i>i-cis</i>-cycHC[6]) can be induced at the expense of thermodynamically favoured <i>cis</i>-cyclohexanohemicucurbit[6]uril (<i>cis</i>-cycHC[6]). The formation of <i>i-cis-</i>cycHC[6] is enhanced in low concentration of the templating chloride anion and suppressed in excess of this template. We found that reaction selectivity is governed by the solution-based template-aided dynamic combinatorial chemistry and continuous removal of the formed cycHC[6] macrocycles from the equilibrating solution by precipitation. Notably, the <i>i-cis</i>-cycHC[6] was isolated with 33% yield. Different binding affinities of three diastereomeric <i>i-cis</i>-, <i>cis</i>-cycHC[6] and their chiral isomer (<i>R,R</i>)-cycHC[6] for trifluoroacetic acid demonstrate the influence of macrocycle geometry on complex formation.

scholarly journals π-Stacking Stopper-Macrocycle Stabilized Dynamically Interlocked [2]Rotaxanes

Molecules ◽  
2021 ◽  
Vol 26 (15) ◽  
pp. 4704
Author(s):  
Sing-Ming Chan ◽  
Fung-Kit Tang ◽  
Ching-Yau Lam ◽  
Chak-Shing Kwan ◽  
Sam C. K. Hau ◽  
...  
Keyword(s):  
Crystal Structures ◽  
Thermodynamic Stability ◽  
Combinatorial Library ◽  
Aromatic Rings ◽  
Interlocked Molecules ◽  
X Ray ◽  
Π Stacking ◽  
Dynamic Combinatorial Library

The synthesis of mechanically interlocked molecules is valuable due to their unique topologies. With π-stacking intercomponent interaction, e.g., phenanthroline and anthracene, novel [2]rotaxanes have been synthesized by dynamic imine clipping reaction. Their X-ray crystal structures indicate the π-stackings between the anthracene moiety (stopper) on the thread and the (hetero)aromatic rings at the macrocycle of the rotaxanes. Moreover, the length of glycol chains affects the extra π-stacking intercomponent interactions between the phenyl groups and the dimethoxy phenyl groups on the thread. Dynamic combinatorial library has shown at best 84% distribution of anthracene-threaded phenanthroline-based rotaxane, coinciding with the crystallography in that the additional π-stacking intercomponent interactions could increase the thermodynamic stability and selectivity of the rotaxanes.

scholarly journals Adventures in molecular recognition. The ins and outs of templating

2000 ◽  
Vol 72 (12) ◽  
pp. 2265-2274 ◽  
Author(s):  
Jeremy K. M. Sanders
Keyword(s):  
Molecular Recognition ◽  
Combinatorial Chemistry ◽  
Biological Systems ◽  
Design Approach ◽  
Supramolecular Systems ◽  
Disulfide Exchange ◽  
Dynamic Combinatorial Chemistry ◽  
Evolutionary Features ◽  
Selection Approach ◽  
Porphyrin Dimers

Two different approaches are described for the creation of supramolecular systems potentially capable of recognition and catalysis. Using the design approach, we have been able to accelerate and influence two different Diels­Alder reactions within the cavities of porphyrin dimers and trimers; this is templating from the outside inwards. The selection approach is a synthetic chemical attempt to capture some of the key evolutionary features of biological systems: dynamic combinatorial chemistry is used to create equilibrating mixtures of potential receptors, and then a template is used to select and amplify the desired system. Five potential reactions for such dynamic chemistry are discussed: base-catalyzed transesterification, hydrazone exchange, disulfide exchange, alkene metathesis, and Pd-catalyzed allyl exchange, and preliminary templating results (inside outwards) are presented.

Structure-Based Design of Inhibitors of the Aspartic Protease Endothiapepsin by Exploiting Dynamic Combinatorial Chemistry

2014 ◽  
Vol 53 (12) ◽  
pp. 3259-3263 ◽  
Author(s):  
Milon Mondal ◽  
Nedyalka Radeva ◽  
Helene Köster ◽  
Ahyoung Park ◽  
Constantinos Potamitis ◽  
...  
Keyword(s):  
Combinatorial Chemistry ◽  
Aspartic Protease ◽  
Dynamic Combinatorial Chemistry

A “Dial-A-Receptor” Dynamic Combinatorial Library

2013 ◽  
Vol 125 (47) ◽  
pp. 12594-12598 ◽  
Author(s):  
Saleh Hamieh ◽  
Vittorio Saggiomo ◽  
Piotr Nowak ◽  
Elio Mattia ◽  
R. Frederick Ludlow ◽  
...  
Keyword(s):  
Combinatorial Library ◽  
Dynamic Combinatorial Library
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