Stereochemistry-dependent hydrogen bonds stabilise stacked conformations in jet-cooled cyclic dipeptides: (LD) vs. (LL) cyclo tyrosine–tyrosine

2018 ◽  
Vol 212 ◽  
pp. 399-419 ◽  
Author(s):  
Feriel BenNasr ◽  
Ariel Pérez-Mellor ◽  
Ivan Alata ◽  
Valeria Lepere ◽  
Nejm-Eddine Jaïdane ◽  
...  
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Cyclic Dipeptides ◽  
Intramolecular Hydrogen

Changing the chirality of one residue prevents the formation of an OH⋯O intramolecular hydrogen bond in cyclo di-tyrosine.

Intramolecular hydrogen bond-induced high chemical stability of metal–organic frameworks

2020 ◽  
Vol 7 (19) ◽  
pp. 3548-3554
Author(s):  
Keke Wang ◽  
Qunmin Wang ◽  
Xiong Wang ◽  
Mei Wang ◽  
Qin Wang ◽  
...  
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Chemical Stability ◽  
Metal Organic Frameworks ◽  
Carboxyl Groups ◽  
High Chemical ◽  
Metal Organic ◽  
Intramolecular Hydrogen ◽  
High Chemical Stability

Intramolecular hydrogen bonds in ligands restrict the rotation of carboxyl groups and consequently enhance the chemical stability of MOFs.

True symmetry or pseudosymmetry: 5-amino-1-(4-methylphenylsulfonyl)-4-pyrazolin-3-one and a comparison with its 1-phenylsulfonyl analogue

2012 ◽  
Vol 69 (1) ◽  
pp. 90-92 ◽  
Author(s):  
Galal H. Elgemeie ◽  
Shahinaz H. Sayed ◽  
Peter G. Jones
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Title Compound ◽  
Acta Cryst ◽  
Interplanar Angle ◽  
Phenyl Derivative ◽  
Compound C ◽  
Independent Molecules ◽  
Intramolecular Hydrogen

The title compound, C10H11N3O3S, (I), crystallizes as the NH tautomer. The two rings subtend an interplanar angle of 72.54 (4)°. An intramolecular hydrogen bond is formed from the NH2group to a sulfonyl O atom. The molecular packing involves layers of molecules parallel to thebcplane atx≃ 0, 1etc., with two classical linear hydrogen bonds (amino–sulfonyl and pyrazoline–carbonyl N—H...O) and a further interaction (amino–sulfonyl N—H...O) completing a three-centre system with the intramolecular contact. The analogous phenyl derivative, (II) [Elgemeie, Hanfy, Hopf & Jones (1998).Acta Cryst.C54, 136–138], crystallizes with essentially the same unit cell and packing pattern, but with two independent molecules that differ significantly in the orientation of the phenyl groups. The space group isP21/cfor (I) butP21for (II), which is thus a pseudosymmetric counterpart of (I).

Intra- and inter-molecular hydrogen bonding in diphytanylglycerol phospholipids: an infrared spectroscopic investigation

1990 ◽  
Vol 68 (1) ◽  
pp. 266-273 ◽  
Author(s):  
L. C. Stewart ◽  
M. Kates ◽  
P. W. Yang ◽  
H. H. Mantsch
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Membrane Lipids ◽  
Head Group ◽  
Exact Nature ◽  
Oh Groups ◽  
Intramolecular Hydrogen ◽  
Phosphate Groups

A series of diphytanylglycerol phospholipids, i.e., diphytanylglycerol phosphate (PA), diphytanylglycerol phosphoglycerophosphate (PGP), the tri- and tetra-methyl derivatives of PGP, and the 2-deoxyglycerol analogue of PGP (dPGP) were studied by Fourier transform infrared spectroscopy. The use of the "deoxy" and methylated analogues of PGP, as well as that of PA and PGP of varying degrees of ionization, allowed the assignment of characteristic infrared bands associated with the phosphate groups. Analysis of these phosphate bands showed that at neutral pH, each of the two phosphate moieties in PGP is singly ionized, whereas in dPGP the phosphomonoester is doubly ionized. This is a consequence of the marked increase in the pK of one of the P-OH groups on the terminal phosphate of PGP (pK > 11), owing to the formation of an intramolecular hydrogen bond between the head group glycerol hydroxyl and the phosphate groups of PGP. Such an intramolecular hydrogen bond can not be formed by the dPGP analogue, and thus both negative charges in dPGP are located at the terminal phosphomonoester group. The O=P—OH groups of PGP also forms a network of intermolecular hydrogen bonds, the exact nature of which depends on concentration and degree of ionization. The possibility of a complex network of hydrogen bonds within (intramolecular) and between (intermolecular) anionic membrane lipids such as that found in PGP, is consistent with the hypothesis that these lipids function as proton-conducting pathways in membranes.Key words: phospholipids, infrared, hydrogen bonding, phosphatidylglycerophosphate, 2-deoxyphosphatidylglycerophosphate.

Temperature dependence of chemical shifts of protons in hydrogen bonds. Experimental evidence on an intramolecular hydrogen bond

1968 ◽  
Vol 46 (17) ◽  
pp. 2865-2868 ◽  
Author(s):  
T. Schaefer ◽  
G. Kotowycz
Keyword(s):  
Hydrogen Bond ◽  
Carbon Tetrachloride ◽  
Chemical Shift ◽  
Hydrogen Bonds ◽  
Temperature Dependence ◽  
Intramolecular Hydrogen Bond ◽  
Chemical Shifts ◽  
Hydroxyl Proton ◽  
Intramolecular Hydrogen ◽  
Strong Intramolecular Hydrogen Bond

A temperature dependence of the chemical shift of the hydroxyl proton in the strong intramolecular hydrogen bond in 3,5-dichlorosalicylaldehyde is observed in carbon tetrachloride and benzene-d6 solutions. Its magnitude of 0.25 to 0.30 × 10−2 p.p.m. per ° C over a range of 100 °C is in agreement with the model described by Muller and Reiter (1).

Estimating the energy of intramolecular hydrogen bonds from1H NMR and QTAIM calculations

2016 ◽  
Vol 14 (47) ◽  
pp. 11199-11211 ◽  
Author(s):  
Andrei V. Afonin ◽  
Alexander V. Vashchenko ◽  
Mark V. Sigalov
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Critical Point ◽  
Intramolecular Hydrogen Bond ◽  
Bond Energy ◽  
Bond Critical Point ◽  
Hydrogen Bond Energy ◽  
H Nmr ◽  
Nmr Data ◽  
Intramolecular Hydrogen

Novel equations have been derived for the assessment of the E intramolecular hydrogen bond energy based on the experimental1H NMR data and the calculated QTAIM topologicalVandρparameters of the hydrogen bond critical point.

scholarly journals N-[2-(Methylsulfanyl)phenyl]-2-sulfanylbenzamide

2012 ◽  
Vol 68 (8) ◽  
pp. o2400-o2400
Author(s):  
Chang-Chih Hsieh ◽  
Hon Man Lee ◽  
Yih-Chern Horng
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Title Compound ◽  
Aromatic Rings ◽  
Intermolecular Hydrogen Bonds ◽  
Methyl Group ◽  
Interplanar Angle ◽  
Compound C ◽  
Intramolecular Hydrogen

In the title compound, C14H13NOS2, the S atom with the methyl group is involved in an intramolecular hydrogen bond with the amido H atom. In the crystal, the sulfanyl H atoms form intermolecular hydrogen bonds with the O atoms, connecting the molecules into zigzag chains along thecaxis. The two aromatic rings exhibit a small interplanar angle of 16.03 (9)°.

Ethyl 1-[5-amino-1-tert-butyl-3-(methylsulfanyl)-1H-pyrazole-4-carbonyl]-5-methyl-3-(methylsulfanyl)-1H-pyrazole-4-carboxylate

2006 ◽  
Vol 62 (5) ◽  
pp. o1679-o1681
Author(s):  
Jun-Fei Li ◽  
Hai-Bin Song ◽  
You-Quan Zhu ◽  
Hua-Zheng Yang
Keyword(s):  
Crystal Structure ◽  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Membered Ring ◽  
Intermolecular Hydrogen Bonds ◽  
Tert Butyl ◽  
The Family ◽  
Title Molecule ◽  
Intramolecular Hydrogen

The title molecule, C17H25N5O3S2, belongs to the family of bis-heterocycles. In the crystal structure, there are one intra- and two intermolecular hydrogen bonds. One of the two pyrazole rings and the six-membered ring formed by the intramolecular hydrogen bond are approximately coplanar.

scholarly journals Intramolecular hydrogen bond directed distribution of conformational populations in the derivatives of N′-benzylidenebenzohydrazide

2019 ◽  
Vol 43 (33) ◽  
pp. 13134-13142 ◽  
Author(s):  
Neeru Arya ◽  
Sandeep Kumar Mishra ◽  
N. Suryaprakash
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Intramolecular Hydrogen Bonds ◽  
Intramolecular Hydrogen ◽  
Derivatives Of

The extensive NMR investigations reveal the presence of E-isomers in the derivative of N′-benzylidenebenzohydrazide. The different conformer populations are controlled by the strength of intramolecular hydrogen bonds.

Cocrystals of 5-fluorocytosine. II. Coformers with variable hydrogen-bonding sites

2012 ◽  
Vol 68 (4) ◽  
pp. 444-452 ◽  
Author(s):  
Maya Tutughamiarso ◽  
Ernst Egert
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Base Pair ◽  
Tautomeric Form ◽  
Flexible Molecules ◽  
Conformational Preferences ◽  
Intramolecular Hydrogen ◽  
Complementary Binding

Two flexible molecules, biuret and 6-acetamidouracil, were cocrystallized with 5-fluorocytosine to study their conformational preferences. In the cocrystal with 5-fluorocytosine (I), biuret exhibits the same conformation as in its hydrate. In contrast, 6-acetamidouracil can adopt two main conformations depending on its crystal environment: in crystal (II) the trans form characterized by an intramolecular hydrogen bond is observed, while in the cocrystal with 5-fluorocytosine (III), the complementary binding induces the cis form. Three cocrystals of 6-methylisocytosine demonstrate that complementary binding enables the crystallization of a specific tautomer. In the cocrystals with 5-fluorocytosine, (IVa) and (IVb), only the 3H tautomer of 6-methylisocytosine is present, whereas in the cocrystal with 6-aminoisocytosine, (V), the 1H tautomeric form is adopted. The complexes observed in the cocrystals are stabilized by three hydrogen bonds similar to those constituting the Watson–Crick C·G base pair.

scholarly journals 5,6-Dimethyl-2-(pyridin-2-yl)-1-[(pyridin-2-yl)methyl]-1H-benzimidazole

2014 ◽  
Vol 70 (3) ◽  
pp. o365-o365 ◽  
Author(s):  
David K. Geiger ◽  
Matthew R. DeStefano
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonds ◽  
Intramolecular Hydrogen Bond ◽  
Title Compound ◽  
Inversion Center ◽  
Compound C ◽  
Intramolecular Hydrogen

The title compound, C20H18N4, was obtainedviathe condensation of 4,5-dimethylbenzene-1,2-diamine with pyridine-2-carbaldehyde. The plane of the 2-(pyridin-2-yl) substitutent is canted by 2.75 (11)° from the plane of the benzimidazole system. The molecule exhibits anS(6) C—H...N intramolecular hydrogen-bond motif. In the crystal, C—H...N hydrogen bonds link pairs of molecules related by a crystallographic inversion center, formingR22(20) rings. Additional weak C—H...N hydrogen bonds result inC(9) chains parallel to [001].

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