scholarly journals Gateway state-mediated, long-range tunnelling in molecular wires

Nanoscale ◽  
2018 ◽  
Vol 10 (6) ◽  
pp. 3060-3067 ◽  
Author(s):  
Sara Sangtarash ◽  
Andrea Vezzoli ◽  
Hatef Sadeghi ◽  
Nicolò Ferri ◽  
Harry M. O'Brien ◽  
...  
Keyword(s):  
Long Range ◽  
Single Molecule ◽  
Molecular Wires

Gateway states in Au/single-molecule/Au junctions profoundly attenuate the conductance decay with length for thiol-contacted alkyl-aromatic-alkyl systems.

scholarly journals Single-molecule junctions of multinuclear organometallic wires: long-range carrier transport brought about by metal–metal interaction

2021 ◽  
Author(s):  
Yuya Tanaka ◽  
Yuya Kato ◽  
Kaho Sugimoto ◽  
Reo Kawano ◽  
Tomofumi Tada ◽  
...  
Keyword(s):  
Long Range ◽  
Single Molecule ◽  
Carrier Transport ◽  
Molecular Wires ◽  
Metal Interaction ◽  
Metal Metal ◽  
Single Molecule Junctions ◽  
High Conductance

Multinuclear organometallic molecular wires having (diethynylthiophene)diyl-Ru(dppe)2 repeating units show high conductance with small attenuation factors. The strong Ru–Ru interaction is the key for the long-range carrier transport.

Strictly linear trinuclear Dy–Ca/Mg–Dy single-molecule magnets: the impact of long-range f–f ferromagnetic interactions on suppressing quantum tunnelling of magnetization leading to slow magnetic relaxation

2017 ◽  
Vol 46 (25) ◽  
pp. 8259-8268 ◽  
Author(s):  
Wan-Ying Zhang ◽  
Yong-Mei Tian ◽  
Hong-Feng Li ◽  
Peng Chen ◽  
Yi-Quan Zhang ◽  
...  
Keyword(s):  
Long Range ◽  
Single Molecule ◽  
Magnetic Relaxation ◽  
Single Molecule Magnets ◽  
Quantum Tunnelling ◽  
Trinuclear Complexes ◽  
Slow Magnetic Relaxation ◽  
Ferromagnetic Interactions ◽  
The Impact

A series of linear trinuclear complexes Ln2M(OQ)8 [Ln(iii) = Dy and Er, M(ii) = Ca and Mg] were structurally and magnetically investigated.

scholarly journals Imaging and energetics of single SSB-ssDNA molecules reveal intramolecular condensation and insight into RecOR function

eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Jason C Bell ◽  
Bian Liu ◽  
Stephen C Kowalczykowski
Keyword(s):  
Long Range ◽  
Single Molecule ◽  
Magnetic Tweezers ◽  
Intramolecular Interactions ◽  
Ssdna Binding ◽  
Ssdna Binding Protein ◽  
Intramolecular Condensation ◽  
Nucleoprotein Complexes ◽  
Ssdna Binding Proteins ◽  
Dna Maintenance

Escherichia coli single-stranded DNA (ssDNA) binding protein (SSB) is the defining bacterial member of ssDNA binding proteins essential for DNA maintenance. SSB binds ssDNA with a variable footprint of ∼30–70 nucleotides, reflecting partial or full wrapping of ssDNA around a tetramer of SSB. We directly imaged single molecules of SSB-coated ssDNA using total internal reflection fluorescence (TIRF) microscopy and observed intramolecular condensation of nucleoprotein complexes exceeding expectations based on simple wrapping transitions. We further examined this unexpected property by single-molecule force spectroscopy using magnetic tweezers. In conditions favoring complete wrapping, SSB engages in long-range reversible intramolecular interactions resulting in condensation of the SSB-ssDNA complex. RecO and RecOR, which interact with SSB, further condensed the complex. Our data support the idea that RecOR--and possibly other SSB-interacting proteins—function(s) in part to alter long-range, macroscopic interactions between or throughout nucleoprotein complexes by microscopically altering wrapping and bridging distant sites.

scholarly journals Long-range single-molecule mapping of chromatin modification in eukaryotes

2021 ◽  
Author(s):  
Zhe Weng ◽  
Fengying Ruan ◽  
Weitian Chen ◽  
Zhe Xie ◽  
Yeming Xie ◽  
...  
Keyword(s):  
Histone Modification ◽  
Long Range ◽  
Single Molecule ◽  
Protein A ◽  
Chromatin Modification ◽  
Protein Binding Sites ◽  
Short Read Sequencing ◽  
Third Generation Sequencing ◽  
Long Read ◽  
Generation Sequencing

The epigenetic modifications of histones are essential marks related to the development and disease pathogenesis, including human cancers. Mapping histone modification has emerged as the widely used tool for studying epigenetic regulation. However, existing approaches limited by fragmentation and short-read sequencing cannot provide information about the long-range chromatin states and represent the average chromatin status in samples. We leveraged the advantage of long read sequencing to develop a method "BIND&MODIFY" for profiling the histone modification of individual DNA fiber. Our approach is based on the recombinant fused protein A-EcoGII, which tethers the methyltransferase EcoGII to the protein binding sites and locally labels the neighboring DNA regions through artificial methylations. We demonstrate that the aggregated BIND&MODIFY signal matches the bulk-level ChIP-seq and CUT&TAG, observe the single-molecule heterogenous histone modification status, and quantify the correlation between distal elements. This method could be an essential tool in the future third-generation sequencing ages.

Single Molecule-Based Electronic Devices: A Review

NANO ◽  
2019 ◽  
Vol 14 (11) ◽  
pp. 1930007 ◽  
Author(s):  
Bingrun Chen ◽  
Ke Xu
Keyword(s):  
Single Molecule ◽  
Electronic Device ◽  
Field Effect Transistors ◽  
Electronic Devices ◽  
Differential Resistance ◽  
Molecular Wires ◽  
Molecular Electronic ◽  
Thermoelectric Effects ◽  
Thermally Induced ◽  
Molecular Electronic Devices

In the face of the fact that the development of traditional silicon-based electronic devices is increasingly limited, single molecule electronic device, which has been attracting more and more attention, is considered as one of the most hopeful candidates to realize the miniaturization of conventional electronic devices. In this paper, an overview of single molecule electronic devices is provided, including molecular electronic devices and electrode types. First, several molecular electronic devices are presented, including molecular diodes, molecular memories, molecular wires, molecular field effect transistors (FET) and molecular switches. Then the influence of different electrode types of the transport characteristics is introduced, showing that graphene is a promising electrode material for single molecule electronic devices. Moreover, other excellent characteristics of molecular devices are briefly introduced, such as potential thermoelectric effects, new thermally induced spin transport phenomena and negative differential resistance (NDR) behavior. Finally, the future challenges to the development of electronic devices based on single molecules are described.

scholarly journals Long-range single-molecule mapping of chromatin accessibility in eukaryotes

2020 ◽  
Vol 17 (3) ◽  
pp. 319-327 ◽  
Author(s):  
Zohar Shipony ◽  
Georgi K. Marinov ◽  
Matthew P. Swaffer ◽  
Nicholas A. Sinnott-Armstrong ◽  
Jan M. Skotheim ◽  
...  
Keyword(s):  
Long Range ◽  
Single Molecule ◽  
Chromatin Accessibility

ERRATUM TO: Quantitation of Mitochondrial DNA Deletions Via Restriction Digestion/Long-Range Single-Molecule PCR

2016 ◽  
pp. E1-E1
Author(s):  
Yevgenya Kraytsberg ◽  
Xinhong Guo ◽  
Saisai Tao ◽  
Alexandra Kuznetsov ◽  
Catherine MacLean ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Long Range ◽  
Single Molecule ◽  
Restriction Digestion ◽  
Dna Deletions

Environmental Effects on the Single Molecule Conductance of bis(thiahexyl)oligothiophenes

2009 ◽  
Vol 1154 ◽  
Author(s):  
Edmund Leary ◽  
Horst Höbenreich ◽  
Simon J. Higgins ◽  
Harm van Zalinge ◽  
Wolfgang Haiss ◽  
...  
Keyword(s):  
Electron Transport ◽  
Single Molecule ◽  
Environmental Effects ◽  
Electronic Devices ◽  
Molecular Wires ◽  
Water Molecules ◽  
Ambient Water ◽  
Molecular Electronic ◽  
Molecular Conductance ◽  
Non Equilibrium Green’S Function

AbstractSimple alkanedithiols exhibit the same molecular conductance whether measured in air, under vacuum or under liquids of different polarity. Here, we show that the presence of water ‘gates’ the conductance of a family of oligothiophene–containing molecular wires, and that the longer the oligothiophene, the larger is the effect; for the longest example studied, the molecular conductance is over two orders of magnitude larger in the presence of water, an unprecedented result suggesting that ambient water is a crucial factor to be taken into account when measuring single molecule conductances (SMC), or in the design of future molecular electronic devices. Theoretical investigation of electron transport through the molecules, using the ab initio non-equilibrium Green's function (SMEAGOL) method, shows that water molecules interact with the thiophene rings, shifting the transport resonances enough to increase greatly the SMC of the longer, more conjugated examples.

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