A multiscale agent-based framework integrated with a constraint-based metabolic network model of cancer for simulating avascular tumor growth

2017 ◽  
Vol 13 (9) ◽  
pp. 1888-1897 ◽  
Author(s):  
Mehrdad Ghadiri ◽  
Mahshid Heidari ◽  
Sayed-Amir Marashi ◽  
Seyed Hasan Mousavi
Keyword(s):  
Tumor Growth ◽  
Metabolic Network ◽  
Network Model ◽  
Agent Based ◽  
Metabolic Network Model ◽  
Avascular Tumor

The integration of an agent-based framework with a constraint-based metabolic network model of cancer for simulating avascular tumor growth.

scholarly journals A low-complexity metabolic network model for the respiratory and fermentative metabolism of Escherichia coli

PLoS ONE ◽  
2018 ◽  
Vol 13 (8) ◽  
pp. e0202565 ◽  
Author(s):  
Ignace L. M. M. Tack ◽  
Philippe Nimmegeers ◽  
Simen Akkermans ◽  
Filip Logist ◽  
Jan F. M. Van Impe
Keyword(s):  
Escherichia Coli ◽  
Metabolic Network ◽  
Network Model ◽  
Low Complexity ◽  
Fermentative Metabolism ◽  
Metabolic Network Model

scholarly journals Predicting Metabolism from Gene Expression in an Improved Whole-Genome Metabolic Network Model of Danio rerio

Zebrafish ◽  
2019 ◽  
Vol 16 (4) ◽  
pp. 348-362 ◽  
Author(s):  
Leonie van Steijn ◽  
Fons J. Verbeek ◽  
Herman P. Spaink ◽  
Roeland M.H. Merks
Keyword(s):  
Gene Expression ◽  
Metabolic Network ◽  
Network Model ◽  
Danio Rerio ◽  
Whole Genome ◽  
Metabolic Network Model

Reconstruction of a generic metabolic network model of cancer cells

2014 ◽  
Vol 10 (11) ◽  
pp. 3014-3021 ◽  
Author(s):  
Mahdieh Hadi ◽  
Sayed-Amir Marashi
Keyword(s):  
Cancer Cells ◽  
Metabolic Network ◽  
Network Model ◽  
Cancer Metabolism ◽  
Metabolic Phenotypes ◽  
Metabolic Network Model

We introduce a generic constraint-based model of cancer metabolism, which is able to successfully predict the metabolic phenotypes of cancer cells.

scholarly journals Improvement of l-arginine production by in silico genome-scale metabolic network model guided genetic engineering

3 Biotech ◽  
2020 ◽  
Vol 10 (3) ◽  
Author(s):  
Mingzhu Huang ◽  
Yue Zhao ◽  
Rong Li ◽  
Weihua Huang ◽  
Xuelan Chen
Keyword(s):  
Genetic Engineering ◽  
Metabolic Network ◽  
Network Model ◽  
In Silico ◽  
Metabolic Network Model ◽  
Genome Scale
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