Catalytic routes to fuels from C1 and oxygenate molecules

2017 ◽  
Vol 197 ◽  
pp. 9-39 ◽  
Author(s):  
Shuai Wang ◽  
Iker Agirrezabal-Telleria ◽  
Aditya Bhan ◽  
Dante Simonetti ◽  
Kazuhiro Takanabe ◽  
...  

This account illustrates concepts in chemical kinetics underpinned by the formalism of transition state theory using catalytic processes that enable the synthesis of molecules suitable as fuels from C1 and oxygenate reactants. Such feedstocks provide an essential bridge towards a carbon-free energy future, but their volatility and low energy density require the formation of new C–C bonds and the removal of oxygen. These transformations are described here through recent advances in our understanding of the mechanisms and site requirements in catalysis by surfaces, with emphasis on enabling concepts that tackle ubiquitous reactivity and selectivity challenges. The hurdles in forming the first C–C bond from C1 molecules are illustrated by the oxidative coupling of methane, in which surface O-atoms form OH radicals from O2 and H2O molecules. These gaseous OH species act as strong H-abstractors and activate C–H bonds with earlier transition states than oxide surfaces, thus rendering activation rates less sensitive to the weaker C–H bonds in larger alkane products than in CH4 reactants. Anhydrous carbonylation of dimethyl ether forms a single C–C bond on protons residing within inorganic voids that preferentially stabilize the kinetically-relevant transition state through van der Waals interactions that compensate for the weak CO nucleophile. Similar solvation effects, but by intrapore liquids instead of inorganic hosts, also become evident as alkenes condense within MCM-41 channels containing isolated Ni2+ active sites during dimerization reactions. Intrapore liquids preferentially stabilize transition states for C–C bond formation and product desorption, leading to unprecedented reactivity and site stability at sub-ambient temperatures and to 1-alkene dimer selectivities previously achieved only on organometallic systems with co-catalysts or activators. C1 homologation selectively forms C4 and C7 chains with a specific backbone (isobutane, triptane) on solid acids, because of methylative growth and hydride transfer rates that reflect the stability of their carbenium ion transition states and are unperturbed by side reactions at low temperatures. Aldol condensation of carbonyl compounds and ketonization of carboxylic acids form new C–C bonds concurrently with O-removal. These reactions involve analogous elementary steps and occur on acid–base site pairs on TiO2 and ZrO2 catalysts. Condensations are limited by α-H abstraction to form enolates via concerted interactions with predominantly unoccupied acid–base pairs. Ketonization is mediated instead by C–C bond formation between hydroxy-enolates and monodentate carboxylates on site pairs nearly saturated by carboxylates. Both reactions are rendered practical through bifunctional strategies, in which H2 and a Cu catalyst function scavenge unreactive intermediates, prevent sequential reactions and concomitant deactivation, and remove thermodynamic bottlenecks. Alkanal–alkene Prins condensations on solid acids occur concurrently with alkene dimerization and form molecules with new C–C bonds as skeletal isomers unattainable by other routes. Their respective transition states are of similar size, leading to selectivities that cannot sense the presence of a confining host. Prins condensation reactions benefit from weaker acid sites because their transition states are less charged than those for oligomerization and consequently less sensitive to conjugate anions that become less stable as acids weaken.

2020 ◽  
Vol 45 ◽  
pp. 146867831989925 ◽  
Author(s):  
Vahid Saheb ◽  
Aidin Bahadori

Theoretical investigations have been performed on the kinetics of bimolecular hydrogen-abstraction reactions of 1,3,5-trioxane and 1,4-dioxane cyclic ethers with OH radicals. Hydrogen abstraction from both axial and equatorial positions of 1,3,5-trioxane and 1,4-dioxane was considered. Optimization of the structures, and the calculation of energies, vibrational frequencies and moments of inertia for all the stationary points including reactants, hydrogen-bonded complexes, transition states and products were carried out using density functional theory at the M06-2X level together with the MG3S basis set. Single-point energy calculations on the optimized points were obtained at the CBS-QB3 level. The calculations show that the title reactions proceed through relatively strong hydrogen-bonded complexes due to the hydrogen bonding between the OH radicals and the oxygen atoms of the cyclic ethers. A two-transition state model (an inner tight transition state and an outer loose transition state) was employed to compute the hydrogen-abstraction rate coefficients. The rate coefficients were also computed using conventional transition state theory considering a tight transition state for the purpose of comparison. It was found that when the reactions proceed via inner transition states with relative energies higher than the reactants, the computed rate coefficients are underestimated by conventional transition state theory.


2010 ◽  
Vol 107 (5) ◽  
pp. 1888-1893 ◽  
Author(s):  
Göran Wallin ◽  
Johan Åqvist

Recent progress in elucidating the peptide bond formation process on the ribosome has led to notion of a proton shuttle mechanism where the 2'-hydroxyl group of the P-site tRNA plays a key role in mediating proton transfer between the nucleophile and leaving group, whereas ribosomal groups do not actively participate in the reaction. Despite these advances, the detailed nature of the transition state for peptidyl transfer and the role of several trapped water molecules in the peptidyl transferase center remain major open questions. Here, we employ high-level quantum chemical ab initio calculations to locate and characterize global transition states for the reaction, described by a molecular model encompassing all the key elements of the reaction center. The calculated activation enthalpy as well as structures are in excellent agreement with experimental data and point to feasibility of an eight-membered “double proton shuttle” mechanism in which an auxiliary water molecule, observed both in computer simulations and crystal structures, actively participates. A second conserved water molecule is found to be of key importance for stabilizing developing negative charge on the substrate oxyanion and its presence is catalytically favorable both in terms of activation enthalpy and entropy. Transition states calculated both for six- and eight-membered mechanisms are invariably late and do not involve significant charge development on the attacking amino group. Predicted kinetic isotope effects consistent with this picture are similar to those observed for uncatalyzed ester aminolysis reactions in solution.


2019 ◽  
Author(s):  
Xihan Chen ◽  
Daniel J. Aschaffenburg ◽  
Tanja Cuk

<p>While catalytic mechanisms on electrode surfaces have been proposed for decades, the pathways by which the product’s chemical bonds evolve from the initial charge-trapping intermediates have not been resolved in time. Here, we discover a reactive population of charge-trapping intermediates with states in the middle of a semiconductor’s band-gap to reveal the dynamics of two parallel transition state pathways for their decay. Upon photo-triggering the water oxidation reaction from the n-SrTiO<sub>3</sub> surface with band-gap, pulsed excitation, the intermediates’ microsecond decay reflects transition state theory (TST) through: (1) two distinct and reaction dependent (pH, T, Ionic Strength, and H/D exchange) time constants, (2) a primary kinetic salt effect on each activation barrier and an H/D kinetic isotope effect on one, and (3) realistic activation barrier heights (~0.4-0.5 eV) and TST pre-factors (~10<sup>11</sup> -10<sup>12</sup> Hz). A photoluminescence from mid-gap states in n-SrTiO<sub>3</sub> reveals the reaction dependent decay; the same spectrum was previously assigned by us to hole-trapping at parallel Ti-O<sup>·</sup>-Ti (bridge) and perpendicular Ti-O<sup>·</sup> (oxyl) O-sites using <i>in-situ</i> ultrafast vibrational and optical spectroscopy. Therefore, the two transition states are naturally associated with the decay of these respective intermediates. Furthermore, we show that reaction conditions select between the two pathways, one of which reflects a labile intermediate facing the electrolyte (the oxyl) and the other a lattice oxygen (the bridge). Altogether, we experimentally isolate an important activation barrier necessary for water oxidation, which is necessary for designing water oxidation catalysts for high O<sub>2</sub> turn-over. Moreover, in isolating it, we identify competing mechanisms for O<sub>2</sub> evolution at surfaces and show how to use reaction conditions to select between them.<b></b></p>


Biochemistry ◽  
2003 ◽  
Vol 42 (36) ◽  
pp. 10545-10553 ◽  
Author(s):  
Richard R. Bott ◽  
Gina Chan ◽  
Blanca Domingo ◽  
Grant Ganshaw ◽  
Constance Y. Hsia ◽  
...  

2019 ◽  
Author(s):  
Xihan Chen ◽  
Daniel J. Aschaffenburg ◽  
Tanja Cuk

<p>While catalytic mechanisms on electrode surfaces have been proposed for decades, the pathways by which the product’s chemical bonds evolve from the initial charge-trapping intermediates have not been resolved in time. Here, we discover a reactive population of charge-trapping intermediates with states in the middle of a semiconductor’s band-gap to reveal the dynamics of two parallel transition state pathways for their decay. Upon photo-triggering the water oxidation reaction from the n-SrTiO<sub>3</sub> surface with band-gap, pulsed excitation, the intermediates’ microsecond decay reflects transition state theory (TST) through: (1) two distinct and reaction dependent (pH, T, Ionic Strength, and H/D exchange) time constants, (2) a primary kinetic salt effect on each activation barrier and an H/D kinetic isotope effect on one, and (3) realistic activation barrier heights (~0.4-0.5 eV) and TST pre-factors (~10<sup>11</sup> -10<sup>12</sup> Hz). A photoluminescence from mid-gap states in n-SrTiO<sub>3</sub> reveals the reaction dependent decay; the same spectrum was previously assigned by us to hole-trapping at parallel Ti-O<sup>·</sup>-Ti (bridge) and perpendicular Ti-O<sup>·</sup> (oxyl) O-sites using <i>in-situ</i> ultrafast vibrational and optical spectroscopy. Therefore, the two transition states are naturally associated with the decay of these respective intermediates. Furthermore, we show that reaction conditions select between the two pathways, one of which reflects a labile intermediate facing the electrolyte (the oxyl) and the other a lattice oxygen (the bridge). Altogether, we experimentally isolate an important activation barrier necessary for water oxidation, which is necessary for designing water oxidation catalysts for high O<sub>2</sub> turn-over. Moreover, in isolating it, we identify competing mechanisms for O<sub>2</sub> evolution at surfaces and show how to use reaction conditions to select between them.<b></b></p>


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