scholarly journals Microbial community structure with trends in methylation gene diversity and abundance in mercury-contaminated rice paddy soils in Guizhou, China

2018 ◽  
Vol 20 (4) ◽  
pp. 673-685 ◽  
Author(s):  
Tatiana A. Vishnivetskaya ◽  
Haiyan Hu ◽  
Joy D. Van Nostrand ◽  
Ann M. Wymore ◽  
Xiaohang Xu ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Gene Diversity ◽  
Rice Paddy ◽  
Paddy Soils ◽  
Rice Paddies ◽  
Sulfate Reducing ◽  
Rice Paddy Soils ◽  
Reducing Bacteria

Sulfate-reducing bacteria and methanogens are the primary Hg-methylators in Chinese rice paddies.

scholarly journals CHARACTERIZATION OF SULFATE REDUCING BACTERIA FROM BIOFILM SULFATE REDUCTION AND CU PRECIPITATION BIOREACTOR (BATCH CULTURE).

2018 ◽  
Vol 2 (2) ◽  
pp. 1
Author(s):  
Tyas Nyonita Punjungsari
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Sulfate Reduction ◽  
Batch Culture ◽  
Microbial Community Structure ◽  
Sulfate Reducing Bacteria ◽  
Zeolite Surface ◽  
Sulfate Reducing ◽  
Reducing Bacteria

The biofilm is a microbial community structure formed on the zeolite surface in a sulfate reduction bioreactor and Cu deposition using a SRB consortium . The biofilm soluble microbial solvent is expected to have the capability in sulfate reduction and Cu deposition. Characterization of isolates is required for the optimization of pure culture . The aim of this study is to isolate and characterize the biofilm sulfate reducing bacteria in the sulfate reduction bioreactor and the precipitation of Cu in Batch Culture by a consortium of Sulfate Reducing Bacteria. The method used in this study cultivation was done by using postgate B medium, isolation was done by diluting biofilm on NaCl salt, bacteria grown on NB and postgate B media, characterization done by morphology and biochemistry. There were 3 isolates of B1 (Metylobacterium ), B3 ( Desulfucoccus ), and B2 ( Desulfobacter ). B3 ( Desulfococcus) has the best ability to reduce sulfate and Cu precipitation.Keywords : Sulfur Reducing Bacteria (SRB), Biofilm, Sulfate, Cu. Received: 26 August, 2017; Accepter: 10 September, 2017 

scholarly journals Detection of sulfate-reducing bacteria as an indicator for successful mitigation of sulfide production

2021 ◽  
Author(s):  
Avishek Dutta ◽  
Fernando Valle ◽  
Thomas Goldman ◽  
Jeff Keating ◽  
Ellen Burke ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Critical Time ◽  
Sulfate Reducing Bacteria ◽  
Time Points ◽  
Sulfate Reducing ◽  
Nitrate Treatment ◽  
Reducing Bacteria ◽  
Planktonic Community

Sulfate-reducing bacteria (SRB) are one of the main sources of biogenic H 2 S generation in oil reservoirs. Excess H 2 S production in these systems leads to oil biosouring, which causes operational risks, health hazards and can increase the cost of refining crude oil. Nitrate salts are often added to the system to suppress sulfidogenesis. Because SRB populations can persist in biofilms even after nitrate treatment, identifying shifts in the sessile community is crucial for successful mitigation. However, sampling the sessile community is hampered by its inaccessibility. Here we use the results of a long-term (148 days) ex situ experiment to identify particular sessile community members from observations of the sample waste stream. Microbial community structure was determined for 731 samples across twenty bioreactors using 16S rRNA gene sequencing. By associating microbial community structure with specific steps in the mitigation process, we could distinguish between taxa associated with H 2 S production and mitigation. After initiation of nitrate treatment, certain SRB populations increased in the planktonic community during critical time points, indicating the dissociation of SRBs from the biofilm. Predicted relative abundances of the dissimilatory sulfate reduction pathway also increased during the critical time points. Here, by analyzing the planktonic community structure, we describe a general method that uses high-throughput amplicon sequencing, metabolic inferences, and cell abundance data to identify successful biofilm mitigation. We anticipate that our approach is also applicable to other systems where biofilms must be mitigated but cannot be easily sampled. Importance Microbial biofilms are commonly present in many industrial processes and can negatively impact performance and safety. Within the oil industry, subterranean biofilms cause biosouring with implications for oil quality, cost, occupational health, and the environment. Because these biofilms cannot be directly sampled, methods are needed to indirectly assess the success of mitigation measures. This study demonstrates how the planktonic microbial community can be used to assess the dissociation of SRB-containing biofilms. We found that an increase in the abundance of a specific SRB population in the effluent after nitrate treatment can be used as a potential indicator for the successful mitigation of biofilm-forming SRBs. Moreover, a method for determining critical time points for detecting potential indicators is suggested. This study expands our knowledge in improving mitigation strategies for biosouring and could have broader implications in other systems where biofilms lead to adverse consequences.

scholarly journals Methane-related changes in prokaryotes along geochemical profiles in sediments of Lake Kinneret (Israel)

2015 ◽  
Vol 12 (10) ◽  
pp. 2847-2860 ◽  
Author(s):  
I. Bar-Or ◽  
E. Ben-Dov ◽  
A. Kushmaro ◽  
W. Eckert ◽  
O. Sivan
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Methane Oxidation ◽  
Microbial Community Structure ◽  
Iron Reduction ◽  
Sulfate Reducing Bacteria ◽  
Lake Kinneret ◽  
Anaerobic Oxidation Of Methane ◽  
Sulfate Reducing ◽  
Reducing Bacteria

Abstract. Microbial methane oxidation is the primary control on the emission of the greenhouse gas methane into the atmosphere. In terrestrial environments, aerobic methanotrophic bacteria are largely responsible for this process. In marine sediments, a coupling of anaerobic oxidation of methane (AOM) with sulfate reduction, often carried out by a consortium of anaerobic methanotrophic archaea (ANME) and sulfate-reducing bacteria, consumes almost all methane produced within those sediments. Motivated by recent evidence for AOM with iron(III) in Lake Kinneret sediments, the goal of the present study was to link the geochemical gradients in the lake porewater to the microbial community structure. Screening of archaeal 16S rRNA gene sequences revealed a shift from hydrogenotrophic to acetoclastic methanogens with depth. The observed changes in microbial community structure suggest possible direct and indirect mechanisms for the AOM coupled to iron reduction in deep sediments. The percentage of members of the Nitrospirales order increased with depth, suggesting their involvement in iron reduction together with Geobacter genus and "reverse methanogenesis". An indirect mechanism through sulfate and ANME seems less probable due to the absence of ANME sequences. This is despite the abundant sequences related to sulfate-reducing bacteria (Deltaproteobacteria) together with the occurrence of dsrA in the deep sediment that could indicate the production of sulfate (disproportionation) from S0 for sulfate-driven AOM. The presence of the functional gene pmoA in the deep anoxic sediment together with sequences related to Methylococcales suggests the existence of a second unexpected indirect pathway – aerobic methane oxidation pathway in an anaerobic environment.

scholarly journals CHARACTERIZATION OF SULFATE REDUCING BACTERIA FROM BIOFILM SULFATE REDUCTION AND CU PRECIPITATION BIOREACTOR (BATCH CULTURE).

2018 ◽  
Vol 2 (2) ◽  
pp. 1
Author(s):  
Tyas Nyonita Punjungsari
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Sulfate Reduction ◽  
Batch Culture ◽  
Microbial Community Structure ◽  
Sulfate Reducing Bacteria ◽  
Zeolite Surface ◽  
Sulfate Reducing ◽  
Reducing Bacteria

The biofilm is a microbial community structure formed on the zeolite surface in a sulfate reduction bioreactor and Cu deposition using a SRB consortium . The biofilm soluble microbial solvent is expected to have the capability in sulfate reduction and Cu deposition. Characterization of isolates is required for the optimization of pure culture . The aim of this study is to isolate and characterize the biofilm sulfate reducing bacteria in the sulfate reduction bioreactor and the precipitation of Cu in Batch Culture by a consortium of Sulfate Reducing Bacteria. The method used in this study cultivation was done by using postgate B medium, isolation was done by diluting biofilm on NaCl salt, bacteria grown on NB and postgate B media, characterization done by morphology and biochemistry. There were 3 isolates of B1 (Metylobacterium ), B3 ( Desulfucoccus ), and B2 ( Desulfobacter ). B3 ( Desulfococcus) has the best ability to reduce sulfate and Cu precipitation.Keywords : Sulfur Reducing Bacteria (SRB), Biofilm, Sulfate, Cu. Received: 26 August, 2017; Accepter: 10 September, 2017

Spatial content and variability of mercury in agricultural soils in the province of Valencia (Spain), with an emphasis on those dedicated to rice crop

2021 ◽  
Author(s):  
Rafael Boluda ◽  
Luis Roca Pérez ◽  
Joaquín Ramos Miras ◽  
José A. Rodríguez Martín ◽  
Jaume Bech Borras
Keyword(s):  
Spatial Distribution ◽  
Rice Straw ◽  
Agricultural Soils ◽  
Simple Random Sampling ◽  
Rice Paddy ◽  
Paddy Soils ◽  
Systematic Sampling ◽  
Rice Paddies ◽  
Natural Park ◽  
Rice Paddy Soils

<p>Mercury (Hg) is a metal potentially dangerous that can accumulate in soils, move to plants and cause significant ecotoxicological risks. The province of Valencia is the third in Spain and has a great agricultural, industrial and tourist vocation; it has an area of 10,763 km<sup>2</sup>, of which it devotes 272,978 ha to cultivation, most of which are irrigated soils. To the south of the city of Valencia, is the Albufera Natural Park (ZEPA area and Ramsar wetland) with 14,806 ha dedicated to rice cultivation. Pollution and burning of rice straw in rice paddies are serious problems. Therefore, the concentration of Hg in agricultural soils in the province of Valencia according to use, with an emphasis on rice paddy soils, and spatial distribution were determined; and the effects of rice straw burning on Hg accumulation on rice paddy soils was assessed. Systematic sampling was carried out throughout the agricultural area at an intensity of a grid of 8 x 8 km, in which samples composed of soil between 0 and 20 cm were collected in a total of 98 plots; and a simple random sampling in the case of rice paddies in 35 sites, distinguishing between plots where the incineration of rice straw was carried out and where it was not. The concentration of Hg was determined with a direct DMA-80 Milestone analyzer in the previously pulverized sample. The detection limit was 1.0 g kg<sup>-1</sup>, the recovery was 95.1% to 101.0% ± 4.0%. The analyses were performed in triplicate. A basic descriptive statistic (means, medians, deviations, and ANOVA) was performed. Samples were grouped according to land use. For geostatistic analysis and in order to obtain the map of the spatial distribution of the concentration of Hg in soils, the classical geostatistic technique was used by ordinary kriging. The concentration of Hg in the soils of the province of Valencia showed great variability. The soils of the rice paddies together with those dedicated to the cultivation of citrus and horticultural of the coastal plain, showed the highest levels of Hg, in contrast to the soils of the interior areas dedicated to dry crops (vineyards, olive, almond and fodder). Spatial analysis reflected a concentration gradient from west to east, suggesting that the Hg in the soils of the interior has a geochemical origin, while in the coast soils it is of anthropic origin. On the other hand, it was observed that the burning of rice straw increased the Hg concentration in rice paddy soils. This research is the first information on the distribution of Hg in the soils of the province of Valencia and a contribution that can help weigh the effects of open burning of rice straw on Valencian rice paddies.</p>

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