Few molecule SERS detection using nanolens based plasmonic nanostructure: application to point mutation detection

RSC Advances ◽  
2016 ◽  
Vol 6 (109) ◽  
pp. 107916-107923 ◽  
Author(s):  
Gobind Das ◽  
Salma Alrasheed ◽  
Maria Laura Coluccio ◽  
Francesco Gentile ◽  
Annalisa Nicastri ◽  
...  
Keyword(s):  
Point Mutation ◽  
Mutation Detection ◽  
Single Point ◽  
Point Mutations ◽  
Plasmonic Nanostructure ◽  
Sers Detection ◽  
Self Similar ◽  
Single Point Mutations

Self-similar chain based nanolens plasmonic devices were fabricated for detecting single point mutations.

scholarly journals Single-point mutation detection in RNA extracts using gold nanoparticles modified with hydrophobic molecular beacon-like structures

2014 ◽  
Vol 50 (23) ◽  
pp. 3018-3020 ◽  
Author(s):  
Alfonso Latorre ◽  
Christian Posch ◽  
Yolanda Garcimartín ◽  
Susana Ortiz-Urda ◽  
Álvaro Somoza
Keyword(s):  
Gold Nanoparticles ◽  
Point Mutation ◽  
Mutation Detection ◽  
Molecular Beacon ◽  
Single Point ◽  
Point Mutations ◽  
Single Point Mutation ◽  
Target Sequence ◽  
Cholesterol Derivative ◽  
Single Point Mutations

The functionalization of gold nanoparticles with a cholesterol derivative affords a sensor that is able to detect single-point mutations. The solubility of the nanoparticles is modulated by the presence of the target sequence inducing its aggregation.

Sharp-featured Au@Ag core/shell nanocuboid synthesis and the label-free ultrasensitive SERS detection of protein single-point mutations

2018 ◽  
Vol 2 (9) ◽  
pp. 1720-1724 ◽  
Author(s):  
Guopeng Tu ◽  
Ntirikwendera Deogratias ◽  
Meng Xu ◽  
Xiaowei Li ◽  
Jiajia Liu ◽  
...  
Keyword(s):  
Single Point ◽  
Point Mutations ◽  
Core Shell ◽  
Label Free ◽  
Sers Detection ◽  
Single Point Mutations

Sharp-featured Au@Ag core/shell nanocuboids were synthesized.

Cupin Variants as Macromolecular Ligand Library for Stereoselective Michael Addition of Nitroalkanes

2019 ◽  
Author(s):  
Nobutaka Fujieda ◽  
Miho Yuasa ◽  
Yosuke Nishikawa ◽  
Genji Kurisu ◽  
Shinobu Itoh ◽  
...  
Keyword(s):  
Michael Addition ◽  
In Silico ◽  
Addition Reaction ◽  
Single Point ◽  
Point Mutations ◽  
Unsaturated Ketone ◽  
Michael Addition Reaction ◽  
Beta Barrel ◽  
Cupin Superfamily ◽  
Single Point Mutations

Cupin superfamily proteins (TM1459) work as a macromolecular ligand framework with a double-stranded beta-barrel structure ligating to a Cu ion through histidine side chains. Variegating the first coordination sphere of TM1459 revealed that H52A and H54A/H58A mutants effectively catalyzed the diastereo- and enantio-selective Michael addition reaction of nitroalkanes to an α,β-unsaturated ketone. Moreover, in silico substrate docking signified C106N and F104W single-point mutations, which inverted the diastereoselectivity of H52A and further improved the stereoselectivity of H54A/H58A, respectively.

Single-Point Mutations in Qβ Virus-like Particles Change Binding to Cells

2021 ◽  
Author(s):  
Marisa L. Martino ◽  
Stephen N. Crooke ◽  
Marianne Manchester ◽  
M.G. Finn
Keyword(s):  
Single Point ◽  
Point Mutations ◽  
Virus Like Particles ◽  
Single Point Mutations

MinD directly interacting with FtsZ at the H10 helix suggests a model for robust activation of MinC to destabilize FtsZ polymers

2017 ◽  
Vol 474 (18) ◽  
pp. 3189-3205 ◽  
Author(s):  
Ashoka Chary Taviti ◽  
Tushar Kant Beuria
Keyword(s):  
Cell Division ◽  
Single Point ◽  
Point Mutations ◽  
Direct Interaction ◽  
Ring Formation ◽  
Z Ring ◽  
Single Point Mutations ◽  
Biochemical Analyses ◽  
Ftsz Assembly ◽  
The Mind

Cell division in bacteria is a highly controlled and regulated process. FtsZ, a bacterial cytoskeletal protein, forms a ring-like structure known as the Z-ring and recruits more than a dozen other cell division proteins. The Min system oscillates between the poles and inhibits the Z-ring formation at the poles by perturbing FtsZ assembly. This leads to an increase in the FtsZ concentration at the mid-cell and helps in Z-ring positioning. MinC, the effector protein, interferes with Z-ring formation through two different mechanisms mediated by its two domains with the help of MinD. However, the mechanism by which MinD triggers MinC activity is not yet known. We showed that MinD directly interacts with FtsZ with an affinity stronger than the reported MinC–FtsZ interaction. We determined the MinD-binding site of FtsZ using computational, mutational and biochemical analyses. Our study showed that MinD binds to the H10 helix of FtsZ. Single-point mutations at the charged residues in the H10 helix resulted in a decrease in the FtsZ affinity towards MinD. Based on our findings, we propose a novel model for MinCD–FtsZ interaction, where MinD through its direct interaction with FtsZ would trigger MinC activity to inhibit FtsZ functions.

scholarly journals Single-point mutations of hepatitis C virus NS3 that impair p53 interaction and anti-apoptotic activity of NS3

2006 ◽  
Vol 340 (3) ◽  
pp. 792-799 ◽  
Author(s):  
Motofumi Tanaka ◽  
Motoko Nagano-Fujii ◽  
Lin Deng ◽  
Satoshi Ishido ◽  
Kiyonao Sada ◽  
...  
Keyword(s):  
Hepatitis C Virus ◽  
Hepatitis C ◽  
Single Point ◽  
Point Mutations ◽  
Single Point Mutations ◽  
Apoptotic Activity

scholarly journals Genetic diversity of the Neotropical otter (Lontra longicaudis Olfers, 1818) in Southern and Southeastern Brazil

2007 ◽  
Vol 67 (4 suppl) ◽  
pp. 813-818 ◽  
Author(s):  
CS. Trinca ◽  
HF. Waldemarin ◽  
E. Eizirik
Keyword(s):  
Molecular Diversity ◽  
Single Point ◽  
Haplotype Diversity ◽  
Point Mutations ◽  
Conservation Strategies ◽  
Southeastern Brazil ◽  
Nucleotide Variability ◽  
Single Point Mutations ◽  
High Level ◽  
Lontra Longicaudis

The Neotropical otter is one of the least known otter species, and it is considered to be threatened to various degrees throughout its geographic range. Little information exists on the ecological characteristics of this species, and no genetic study has been published about it until now, hampering the design of adequate conservation strategies for its populations. To contribute with genetic information to comprehensive conservation efforts on behalf of L. longicaudis, we characterized the molecular diversity of the 5’ portion of the mtDNA control region in samples from this species collected in Southern and Southeastern Brazil. The sequence analysis revealed a high level of haplotype diversity (h = 0.819; SE = 0.0052) and nucleotide variability ranging from 0.0039 to 0.0067. One of the sampled haplotypes was the most common in both regions and, from this sequence, several other (locally occurring) haplotypes could be derived by single point mutations. No significant genetic differentiation was observed between the Southern and Southeastern regions.

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