scholarly journals Thermodynamic and kinetic characterization of transmembrane helix association

2015 ◽  
Vol 17 (2) ◽  
pp. 1390-1398 ◽  
Author(s):  
Aiswarya B. Pawar ◽  
Sneha A. Deshpande ◽  
Srinivasa M. Gopal ◽  
Tsjerk A. Wassenaar ◽  
Chaitanya A. Athale ◽  
...  
Keyword(s):  
Transmembrane Helix ◽  
Transmembrane Proteins ◽  
Coarse Grain ◽  
Kinetic Characterization ◽  
Cellular Processes ◽  
Modeling Methods ◽  
Scale Modeling ◽  
Meso Scale

The transient dimerization of transmembrane proteins is an important event in several cellular processes and here we use coarse-grain and meso-scale modeling methods to quantify their underlying dynamics.

Characterization of Caribbean Meso-Scale Eddies

2006 ◽  
Author(s):  
Jose M. Lopez ◽  
Jorge E. Corredor ◽  
Julio M. Morell ◽  
Jorge E. Capella ◽  
Fernando Gilbes
Keyword(s):  
Meso Scale

Kinetic Characterization of Anticarsia gemmatalis Digestive Serine- Proteases and the Inhibitory Effect of Synthetic Peptides

2018 ◽  
Vol 24 (11) ◽  
Author(s):  
Adriana M. Patarroyo-Vargas ◽  
Yaremis B. Merino-Cabrera ◽  
Jose C. Zanuncio ◽  
Francelina Rocha ◽  
Wellington G. Campos ◽  
...  
Keyword(s):  
Synthetic Peptides ◽  
Serine Proteases ◽  
Inhibitory Effect ◽  
Anticarsia Gemmatalis ◽  
Kinetic Characterization

scholarly journals Evidence for an evolutionary relationship between Vmp1 and bacterial DedA proteins

2019 ◽  
Vol 63 (1-2) ◽  
pp. 67-71 ◽  
Author(s):  
Luis-Carlos Tábara ◽  
Olivier Vincent ◽  
Ricardo Escalante
Keyword(s):  
Experimental Approach ◽  
Functional Relationship ◽  
Evolutionary Relationship ◽  
Transmembrane Proteins ◽  
Lipid Homeostasis ◽  
Molecular Function ◽  
Yeast Protein ◽  
Glycine Residue ◽  
Cellular Processes ◽  
Domain Of Unknown Function

VMP1 and DedA proteins are conserved families of transmembrane proteins in eukaryotes and prokaryotes respectively. Despite numerous reports involving these proteins in multiple cellular processes, their molecular function is still unknown. They share the domain of unknown function PF09335, suggesting a possible functional relationship between these protein families. Here we show that VMP1 from different species contain two short motifs conserved in the bacterial DedA proteins and the yeast protein Tvp38. The hallmark of one of these motifs is a glycine residue previously shown to be strictly conserved in all the DedA proteins. Substitution of this residue to leucine, glutamate or arginine in Dictyostelium Vmp1 inactivates the protein, as shown by the inability of the mutants to rescue the phenotypes associated with the lack of Vmp1 including development and lipid homeostasis. This is the first experimental approach that supports an evolutionary relationship between Vmp1 and DedA proteins and highlights the importance of the conserved glycine residue in the PF09335 domain.

scholarly journals Kinetic characterization of yeast alcohol dehydrogenases. Amino acid residue 294 and substrate specificity.

1987 ◽  
Vol 262 (8) ◽  
pp. 3754-3761
Author(s):  
A.J. Ganzhorn ◽  
D.W. Green ◽  
A.D. Hershey ◽  
R.M. Gould ◽  
B.V. Plapp
Keyword(s):  
Amino Acid ◽  
Substrate Specificity ◽  
Amino Acid Residue ◽  
Kinetic Characterization ◽  
Alcohol Dehydrogenases

scholarly journals A Concerted Action of UBA5 C-Terminal Unstructured Regions Is Important for Transfer of Activated UFM1 to UFC1

2021 ◽  
Vol 22 (14) ◽  
pp. 7390
Author(s):  
Nicole Wesch ◽  
Frank Löhr ◽  
Natalia Rogova ◽  
Volker Dötsch ◽  
Vladimir V. Rogov
Keyword(s):  
Cellular Localization ◽  
Molecular Mechanisms ◽  
Biochemical Characterization ◽  
Effective Interaction ◽  
Regulatory Region ◽  
Titration Calorimetry ◽  
Enzymatic Reactions ◽  
Cellular Processes ◽  
Mechanism Of Interaction

Ubiquitin fold modifier 1 (UFM1) is a member of the ubiquitin-like protein family. UFM1 undergoes a cascade of enzymatic reactions including activation by UBA5 (E1), transfer to UFC1 (E2) and selective conjugation to a number of target proteins via UFL1 (E3) enzymes. Despite the importance of ufmylation in a variety of cellular processes and its role in the pathogenicity of many human diseases, the molecular mechanisms of the ufmylation cascade remains unclear. In this study we focused on the biophysical and biochemical characterization of the interaction between UBA5 and UFC1. We explored the hypothesis that the unstructured C-terminal region of UBA5 serves as a regulatory region, controlling cellular localization of the elements of the ufmylation cascade and effective interaction between them. We found that the last 20 residues in UBA5 are pivotal for binding to UFC1 and can accelerate the transfer of UFM1 to UFC1. We solved the structure of a complex of UFC1 and a peptide spanning the last 20 residues of UBA5 by NMR spectroscopy. This structure in combination with additional NMR titration and isothermal titration calorimetry experiments revealed the mechanism of interaction and confirmed the importance of the C-terminal unstructured region in UBA5 for the ufmylation cascade.

A novel synergistic multi-scale modeling framework to predict micro- and meso-scale damage behaviors of 2D triaxially braided composite

2021 ◽  
pp. 105678952110339
Author(s):  
Hongyong Jiang ◽  
Yiru Ren ◽  
Qiduo Jin
Keyword(s):  
Compressive Load ◽  
Scale Model ◽  
Modeling Framework ◽  
Braided Composite ◽  
Multi Scale ◽  
Scale Modeling ◽  
Bridge Model ◽  
Multi Scale Modeling ◽  
Transverse Damage ◽  
Meso Scale

A novel synergistic multi-scale modeling framework with a coupling of micro- and meso-scale is proposed to predict damage behaviors of 2D-triaxially braided composite (2DTBC). Based on the Bridge model, the internal stress and micro damage of constituent materials are respectively coupled with the stress and damage of tow. The initial effective elastic properties of tow (IEEP) used as the predefined data are estimated by micro-mechanics models. Due to in-situ effects, stress concentration factor (SCF) is considered in the micro matrix, exhibiting progressive damage accumulation. Comparisons of IEEP and strengths between the Bridge and Chamis’ theory are conducted to validate the values of IEEP and SCF. Based on the representative volume element (RVE), the macro properties and damage modes of 2DTBC are predicted to be consistent with available experiments and meso-scale simulation. Both axial and transverse damage mechanisms of 2DTBC under tensile or compressive load are revealed. Micro fiber and matrix damage accumulations have significant effects on the meso-scale axial and transverse damage of tows due to multi-scale coupling effects. Different from existing meso-/multi-scale models, the proposed multi-scale model can capture a crucial phenomenon that the transverse damage of tow is vulnerable to micro fiber fracture. The proposed multi-scale framework provides a robust tool for future systematic studies on constituent materials level to larger-scale aeronautical materials.

Kinetic characterization of a slow-binding inhibitor of Bla2: thiomaltol

2012 ◽  
Vol 28 (1) ◽  
pp. 137-142 ◽  
Author(s):  
Sara R. Schlesinger ◽  
Britain Bruner ◽  
Patrick J. Farmer ◽  
Sung-Kun Kim
Keyword(s):  
Kinetic Characterization ◽  
Slow Binding Inhibitor
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