Genome-wide analysis of radiation-induced mutations in rice (Oryza sativa L. ssp. indica)

2014 ◽  
Vol 10 (4) ◽  
pp. 795 ◽  
Author(s):  
Zuxin Cheng ◽  
Juncheng Lin ◽  
Tongxiang Lin ◽  
Ming Xu ◽  
Zhiwei Huang ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Induced Mutations ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Radiation Induced

Genome-wide analysis of cyclin family in rice (Oryza Sativa L.)

2006 ◽  
Vol 275 (4) ◽  
pp. 374-386 ◽  
Author(s):  
Honggui La ◽  
Jun Li ◽  
Zhendong Ji ◽  
Yanjun Cheng ◽  
Xiuli Li ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.)

Plant Science ◽  
2007 ◽  
Vol 172 (4) ◽  
pp. 708-721 ◽  
Author(s):  
R. Naga Amrutha ◽  
P. Nataraj Sekhar ◽  
Rajeev K. Varshney ◽  
P.B. Kavi Kishor
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Genome Wide Analysis ◽  
Potassium Transporter ◽  
Genome Wide

scholarly journals Genome-wide analysis of potential cross-reactive endogenous allergens in rice ( Oryza sativa L.)

2015 ◽  
Vol 2 ◽  
pp. 1233-1245 ◽  
Author(s):  
Fang Chao Zhu ◽  
Rui Zong Jia ◽  
Lin Xu ◽  
Hua Kong ◽  
Yun Ling Guo ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Oryza Sativa L ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica

2013 ◽  
Vol 6 (5) ◽  
pp. 1463-1472 ◽  
Author(s):  
Zhou Du ◽  
Hui Li ◽  
Qiang Wei ◽  
Xin Zhao ◽  
Chunchao Wang ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Histone Modifications ◽  
Oryza Sativa L ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide identification, classification, expression profiling and DNA methylation (5mC) analysis of stress-responsive ZFP transcription factors in rice (Oryza sativa L.)

Gene ◽  
2019 ◽  
Vol 718 ◽  
pp. 144018
Author(s):  
Fiaz Ahmad ◽  
Kiran Farman ◽  
Muhammad Waseem ◽  
Rashid Mehmood Rana ◽  
Muhammad Amjad Nawaz ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Oryza Sativa ◽  
Transcription Factors ◽  
Expression Profiling ◽  
Oryza Sativa L ◽  
Genome Wide

scholarly journals Genome-wide analysis and environmental response profiling of phosphate-induced-1 family genes in rice (Oryza sativa)

2019 ◽  
Vol 33 (1) ◽  
pp. 627-638 ◽  
Author(s):  
Changqian Quan ◽  
Zhigang Bai ◽  
Shiwei Zheng ◽  
Jingming Zhou ◽  
Qiang Yu ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Environmental Response ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-Wide Association Study Unravels LRK1 as a Dark Respiration Regulator in Rice (Oryza sativa L.)

2020 ◽  
Vol 21 (14) ◽  
pp. 4930
Author(s):  
Mingnan Qu ◽  
Jemaa Essemine ◽  
Ming Li ◽  
Shuoqi Chang ◽  
Tiangen Chang ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Association Study ◽  
Natural Variation ◽  
Genome Wide Association Study ◽  
Oryza Sativa L ◽  
Dark Respiration ◽  
Genome Wide Association ◽  
Strong Positive Correlation ◽  
Diversity Panel ◽  
Genome Wide

Respiration is a major plant physiological process that generates adenosine triphosphate (ATP) to support the various pathways involved in the plant growth and development. After decades of focused research on basic mechanisms of respiration, the processes and major proteins involved in respiration are well elucidated. However, much less is known about the natural variation of respiration. Here we conducted a survey on the natural variation of leaf dark respiration (Rd) in a global rice minicore diversity panel and applied a genome-wide association study (GWAS) in rice (Oryza sativa L.) to determine candidate loci associated with Rd. This rice minicore diversity panel consists of 206 accessions, which were grown under both growth room (GR) and field conditions. We found that Rd shows high single-nucleotide polymorphism (SNP) heritability under GR and it is significantly affected by genotype-environment interactions. Rd also exhibits strong positive correlation to the leaf thickness and chlorophyll content. GWAS results of Rd collected under GR and field show an overlapped genomic region in the chromosome 3 (Chr.3), which contains a lead SNP (3m29440628). There are 12 candidate genes within this region; among them, three genes show significantly higher expression levels in accessions with high Rd. Particularly, we observed that the LRK1 gene, annotated as leucine rich repeat receptor kinase, was up-regulated four times. We further found that a single significantly associated SNPs at the promoter region of LRK1, was strongly correlated with the mean annual temperature of the regions from where minicore accessions were collected. A rice lrk1 mutant shows only ~37% Rd of that of WT and retarded growth following exposure to 35 °C for 30 days, but only 24% reduction in growth was recorded under normal temperature (25 °C). This study demonstrates a substantial natural variation of Rd in rice and that the LRK1 gene can regulate leaf dark respiratory fluxes, especially under high temperature.

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