Oligopyridine–ruthenium(ii)–amino acid conjugates: synthesis, characterization, DNA binding properties and interactions with the oligonucleotide duplex d(5′-CGCGCG-3′)2

2009 ◽  
pp. 6403 ◽  
Author(s):  
Katelitsa Triantafillidi ◽  
Konstantina Karidi ◽  
Jaroslav Malina ◽  
Achilleas Garoufis
Keyword(s):  
Amino Acid ◽  
Dna Binding ◽  
Binding Properties ◽  
Amino Acid Conjugates ◽  
Oligonucleotide Duplex ◽  
Dna Binding Properties

Synthesis, characterization and DNA binding properties of oligopyridine-ruthenium(II)-amino acid conjugates

2007 ◽  
Vol 101 (10) ◽  
pp. 1483-1491 ◽  
Author(s):  
Konstantina Karidi ◽  
Jan Reedijk ◽  
Nick Hadjiliadis ◽  
Achilleas Garoufis
Keyword(s):  
Amino Acid ◽  
Dna Binding ◽  
Binding Properties ◽  
Amino Acid Conjugates ◽  
Dna Binding Properties

scholarly journals The DNA-binding specificity of the hepatocyte nuclear factor 3/forkhead domain is influenced by amino-acid residues adjacent to the recognition helix.

1994 ◽  
Vol 14 (4) ◽  
pp. 2755-2766 ◽  
Author(s):  
D G Overdier ◽  
A Porcella ◽  
R H Costa
Keyword(s):  
Amino Acid ◽  
Dna Binding ◽  
Hepatocyte Nuclear Factor ◽  
Binding Properties ◽  
Winged Helix ◽  
Amino Acid Region ◽  
Dna Binding Specificity ◽  
Recognition Helix ◽  
Dna Binding Properties ◽  
Acid Region

Three distinct hepatocyte nuclear factor 3 (HNF-3) proteins (HNF-3 alpha, -3 beta, and -3 gamma) are known to regulate the transcription of liver-specific genes. The HNF-3 proteins bind to DNA as a monomer through a modified helix-turn-helix, known as the winged helix motif, which is also utilized by a number of developmental regulators, including the Drosophila homeotic forkhead (fkh) protein. We have previously described the isolation, from rodent tissue, of an extensive family of tissue-specific HNF-3/fkh homolog (HFH) genes sharing homology in their winged helix motifs. In this report, we have determined the preferred DNA-binding consensus sequence for the HNF-3 beta protein as well as for two divergent family members, HFH-1 and HFH-2. We show that these HNF-3/fkh proteins bind to distinct DNA sites and that the specificity of protein recognition is dependent on subtle nucleotide alterations in the site. The HNF-3, HFH-1, and HFH-2 consensus binding sequences were also used to search DNA regulatory regions to identify potential target genes. Furthermore, an analysis of the DNA-binding properties of a series of HFH-1/HNF-3 beta protein chimeras has allowed us to identify a 20-amino-acid region, located adjacent to the DNA recognition helix, which contributes to DNA-binding specificity. These sequences are not involved in base-specific contacts and include residues which diverge within the HNF-3/fkh family. Replacement of this 20-amino-acid region in HNF-3 beta with corresponding residues from HFH-1 enabled the HNF-3 beta recognition helix to bind only HFH-1-specific DNA-binding sites. We propose a model in which this 20-amino-acid flanking region influences the DNA-binding properties of the recognition helix.

scholarly journals The DNA-binding specificity of the hepatocyte nuclear factor 3/forkhead domain is influenced by amino-acid residues adjacent to the recognition helix

1994 ◽  
Vol 14 (4) ◽  
pp. 2755-2766
Author(s):  
D G Overdier ◽  
A Porcella ◽  
R H Costa
Keyword(s):  
Amino Acid ◽  
Dna Binding ◽  
Hepatocyte Nuclear Factor ◽  
Binding Properties ◽  
Winged Helix ◽  
Amino Acid Region ◽  
Dna Binding Specificity ◽  
Recognition Helix ◽  
Dna Binding Properties ◽  
Acid Region

Three distinct hepatocyte nuclear factor 3 (HNF-3) proteins (HNF-3 alpha, -3 beta, and -3 gamma) are known to regulate the transcription of liver-specific genes. The HNF-3 proteins bind to DNA as a monomer through a modified helix-turn-helix, known as the winged helix motif, which is also utilized by a number of developmental regulators, including the Drosophila homeotic forkhead (fkh) protein. We have previously described the isolation, from rodent tissue, of an extensive family of tissue-specific HNF-3/fkh homolog (HFH) genes sharing homology in their winged helix motifs. In this report, we have determined the preferred DNA-binding consensus sequence for the HNF-3 beta protein as well as for two divergent family members, HFH-1 and HFH-2. We show that these HNF-3/fkh proteins bind to distinct DNA sites and that the specificity of protein recognition is dependent on subtle nucleotide alterations in the site. The HNF-3, HFH-1, and HFH-2 consensus binding sequences were also used to search DNA regulatory regions to identify potential target genes. Furthermore, an analysis of the DNA-binding properties of a series of HFH-1/HNF-3 beta protein chimeras has allowed us to identify a 20-amino-acid region, located adjacent to the DNA recognition helix, which contributes to DNA-binding specificity. These sequences are not involved in base-specific contacts and include residues which diverge within the HNF-3/fkh family. Replacement of this 20-amino-acid region in HNF-3 beta with corresponding residues from HFH-1 enabled the HNF-3 beta recognition helix to bind only HFH-1-specific DNA-binding sites. We propose a model in which this 20-amino-acid flanking region influences the DNA-binding properties of the recognition helix.

Synthesis and DNA binding properties of pyrrole amino acid-containing peptides

2005 ◽  
Vol 46 (4) ◽  
pp. 647-651 ◽  
Author(s):  
Tushar Kanti Chakraborty ◽  
Bajjuri Krishna Mohan ◽  
Muthaiah Gnanamani ◽  
Souvik Maiti
Keyword(s):  
Amino Acid ◽  
Dna Binding ◽  
Binding Properties ◽  
Dna Binding Properties

Chemistry of Some Amino Acid Complexes of Ruthenium. Synthesis, Characterization, and DNA Binding Properties

2002 ◽  
Vol 41 (17) ◽  
pp. 4605-4609 ◽  
Author(s):  
Kanchana Majumder ◽  
Ray J. Butcher ◽  
Samaresh Bhattacharya
Keyword(s):  
Amino Acid ◽  
Dna Binding ◽  
Binding Properties ◽  
Amino Acid Complexes ◽  
Dna Binding Properties
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