Crystal structures of dicarboxy-2,2′-bipyridyl complexes: the role of hydrogen bonding and stacking interactions

2004 ◽  
pp. 492-497 ◽  
Author(s):  
Craig J. Matthews ◽  
Mark R. J. Elsegood ◽  
Gérald Bernardinelli ◽  
William Clegg ◽  
Alan F. Williams
Keyword(s):  
Hydrogen Bonding ◽  
Crystal Structures ◽  
Stacking Interactions

Supramolecular hydrogen-bonding patterns in two cocrystals of the N(7)–H tautomeric form ofN6-benzoyladenine:N6-benzoyladenine–3-hydroxypyridinium-2-carboxylate (1/1) andN6-benzoyladenine–DL-tartaric acid (1/1)

2015 ◽  
Vol 71 (11) ◽  
pp. 985-990 ◽  
Author(s):  
Ammasai Karthikeyan ◽  
Robert Swinton Darious ◽  
Packianathan Thomas Muthiah ◽  
Franc Perdih
Keyword(s):  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Crystal Structures ◽  
Tartaric Acid ◽  
Dihedral Angle ◽  
Tautomeric Form ◽  
Stacking Interactions ◽  
Graph Set ◽  
Purine Ring ◽  
Ring Motif

Two novel cocrystals of the N(7)—H tautomeric form ofN6-benzoyladenine (BA), namelyN6-benzoyladenine–3-hydroxypyridinium-2-carboxylate (3HPA) (1/1), C12H9N5O·C6H5NO3, (I), andN6-benzoyladenine–DL-tartaric acid (TA) (1/1), C12H9N5O·C4H6O6, (II), are reported. In both cocrystals, theN6-benzoyladenine molecule exists as the N(7)—H tautomer, and this tautomeric form is stabilized by intramolecular N—H...O hydrogen bonding between the benzoyl C=O group and the N(7)—H hydrogen on the Hoogsteen site of the purine ring, forming anS(7) motif. The dihedral angle between the adenine and phenyl planes is 0.94 (8)° in (I) and 9.77 (8)° in (II). In (I), the Watson–Crick face of BA (N6—H and N1; purine numbering) interacts with the carboxylate and phenol groups of 3HPA through N—H...O and O—H...N hydrogen bonds, generating a ring-motif heterosynthon [graph setR22(6)]. However, in (II), the Hoogsteen face of BA (benzoyl O atom and N7; purine numbering) interacts with TA (hydroxy and carbonyl O atoms) through N—H...O and O—H...O hydrogen bonds, generating a different heterosynthon [graph setR22(4)]. Both crystal structures are further stabilized by π–π stacking interactions.

scholarly journals The role of π–π stacking and hydrogen-bonding interactions in the assembly of a series of isostructural group IIB coordination compounds

2019 ◽  
Vol 75 (2) ◽  
pp. 178-188 ◽  
Author(s):  
Taraneh Hajiashrafi ◽  
Roghayeh Zekriazadeh ◽  
Keith J. Flanagan ◽  
Farnoush Kia ◽  
Antonio Bauzá ◽  
...  
Keyword(s):  
Hydrogen Bonding ◽  
Solid State ◽  
Coordination Compounds ◽  
Spectroscopic Techniques ◽  
Stacking Interactions ◽  
X Ray Crystallography ◽  
Hydrogen Bonding Interactions ◽  
Π Stacking ◽  
Research Domain

The supramolecular chemistry of coordination compounds has become an important research domain of modern inorganic chemistry. Herein, six isostructural group IIB coordination compounds containing a 2-{[(2-methoxyphenyl)imino]methyl}phenol ligand, namely dichloridobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)zinc(II), [ZnCl2(C28H26N2O4)], 1, diiodidobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)zinc(II), [ZnI2(C28H26N2O4)], 2, dibromidobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)cadmium(II), [CdBr2(C28H26N2O4)], 3, diiodidobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)cadmium(II), [CdI2(C28H26N2O4)], 4, dichloridobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)mercury(II), [HgCl2(C28H26N2O4)], 5, and diiodidobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)mercury(II), [HgI2(C28H26N2O4)], 6, were synthesized and characterized by X-ray crystallography and spectroscopic techniques. All six compounds exhibit an infinite one-dimensional ladder in the solid state governed by the formation of hydrogen-bonding and π–π stacking interactions. The crystal structures of these compounds were studied using geometrical and Hirshfeld surface analyses. They have also been studied using M06-2X/def2-TZVP calculations and Bader's theory of `atoms in molecules'. The energies associated with the interactions, including the contribution of the different forces, have been evaluated. In general, the π–π stacking interactions are stronger than those reported for conventional π–π complexes, which is attributed to the influence of the metal coordination, which is stronger for Zn than either Cd or Hg. The results reported herein might be useful for understanding the solid-state architecture of metal-containing materials that contain M II X 2 subunits and aromatic organic ligands.

DNA Sequence-Specific Reading by Echinomycin: Role of Hydrogen Bonding and Stacking Interactions

1994 ◽  
Vol 37 (11) ◽  
pp. 1602-1609 ◽  
Author(s):  
Jose Gallego ◽  
F. J. Luque ◽  
Modesto Orozco ◽  
Carolina Burgos ◽  
Julio Alvarez-Builla ◽  
...  
Keyword(s):  
Hydrogen Bonding ◽  
Dna Sequence ◽  
Stacking Interactions ◽  
Specific Reading

scholarly journals Structures of furanosides: geometrical analysis of low-temperature X-ray and neutron crystal structures of five crystalline methyl pentofuranosides

2001 ◽  
Vol 57 (2) ◽  
pp. 213-220 ◽  
Author(s):  
Artem Evdokimov ◽  
A. Joseph Gilboa ◽  
Thomas F. Koetzle ◽  
Wim T. Klooster ◽  
Arthur J. Schultz ◽  
...  
Keyword(s):  
Hydrogen Bonding ◽  
Crystal Structures ◽  
Critical Role ◽  
Chair Conformation ◽  
Geometrical Analysis ◽  
X Ray ◽  
Wide Range ◽  
First Time ◽  
Ring Conformations

Crystal structures of all five crystalline methyl D-pentofuranosides, methyl α-D-arabinofuranoside (1), methyl β-D-arabinofuranoside (2), methyl α-D-lyxofuranoside (3), methyl β-D-ribofuranoside (4) and methyl α-D-xylofuranoside (5) have been determined by means of cryogenic X-ray and neutron crystallography. The neutron diffraction experiments provide accurate, unbiased H-atom positions which are especially important because of the critical role of hydrogen bonding in these systems. This paper summarizes the geometrical and conformational parameters of the structures of all five crystalline methyl pentofuranosides, several of them reported here for the first time. The methyl pentofuranoside structures are compared with the structures of the five crystalline methyl hexopyranosides for which accurate X-ray and neutron structures have been determined. Unlike the methyl hexopyranosides, which crystallize exclusively in the C 1 chair conformation, the five crystalline methyl pentofuranosides represent a very wide range of ring conformations.

The Role of Hydrogen Bonding in the Crystal Structures of Zinc Phosphate Hydrates

2004 ◽  
Vol 10 (11) ◽  
pp. 2795-2803 ◽  
Author(s):  
Laurent Herschke ◽  
Volker Enkelmann ◽  
Ingo Lieberwirth ◽  
Gerhard Wegner
Keyword(s):  
Hydrogen Bonding ◽  
Crystal Structures ◽  
Zinc Phosphate

Crystal structures of two (3-hydroxy-4-nitrobenzoato) complexes of magnesium(II): Ionic entities stabilized by stacking interactions and extensive hydrogen bonding

Polyhedron ◽  
2008 ◽  
Vol 27 (9-10) ◽  
pp. 2097-2104 ◽  
Author(s):  
Georges Morgant ◽  
Jean d’Angelo ◽  
Didier Desmaële ◽  
Emma Dichi ◽  
Mehrez Sghaier ◽  
...  
Keyword(s):  
Hydrogen Bonding ◽  
Crystal Structures ◽  
Stacking Interactions

scholarly journals B-DNA structure and stability: the role of hydrogen bonding, π–π stacking interactions, twist-angle, and solvation

2014 ◽  
Vol 12 (26) ◽  
pp. 4691-4700 ◽  
Author(s):  
Jordi Poater ◽  
Marcel Swart ◽  
F. Matthias Bickelhaupt ◽  
Célia Fonseca Guerra
Keyword(s):  
Hydrogen Bonding ◽  
Quantum Chemical ◽  
Twist Angle ◽  
Dna Structure ◽  
Stacking Interactions ◽  
Chemical Analyses ◽  
Structure And Stability ◽  
Π Stacking ◽  
Insight Into

Insight into structure and stability of B-DNA is obtained through systematic quantum chemical analyses of the roles played by hydrogen bonding, π–π stacking, solvation, and twist-angle.

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