Sequence-dependent alkylation of guanine residues in duplex DNA Molecular dynamics study

Thi X. T. Sayle; Julia M. Goodfellow

doi:10.1039/a701845b

Sequence-dependent alkylation of guanine residues in duplex DNA Molecular dynamics study

Journal of the Chemical Society Faraday Transactions ◽

10.1039/a701845b ◽

1997 ◽

Vol 93 (14) ◽

pp. 2413-2418 ◽

Cited By ~ 2

Author(s):

Thi X. T. Sayle ◽

Julia M. Goodfellow

Keyword(s):

Molecular Dynamics ◽

Duplex Dna ◽

Sequence Dependent

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Sequence-Dependent Binding of Flavonoids to Duplex DNA

Journal of Chemical Information and Modeling ◽

10.1021/ci5006965 ◽

2015 ◽

Vol 55 (2) ◽

pp. 421-433 ◽

Cited By ~ 8

Author(s):

Petar M. Mitrasinovic

Keyword(s):

Duplex Dna ◽

Sequence Dependent

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Studies of DNA dumbbells VII: Evaluation of the next-nearest-neighbor sequence-dependent interactions in duplex DNA

Biopolymers ◽

10.1002/(sici)1097-0282(1999)52:1<29::aid-bip2>3.0.co;2-k ◽

1999 ◽

Vol 52 (1) ◽

pp. 29-56 ◽

Cited By ~ 23

Author(s):

Richard Owczarzy ◽

Peter M. Vallone ◽

Robert F. Goldstein ◽

Albert S. Benight

Keyword(s):

Nearest Neighbor ◽

Duplex Dna ◽

Sequence Dependent

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Molecular Dynamics Simulation of Smaller Granular Particles Deposition on a Larger One Due to Velocity Sequence Dependent Electrical Charge Distribution

10.1063/1.3667258 ◽

2011 ◽

Author(s):

Euis Sustini ◽

Siti Nurul Khotimah ◽

Ferry Iskandar ◽

Sparisoma Viridi ◽

Ferry Iskandar ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Charge Distribution ◽

Electrical Charge ◽

Dynamics Simulation ◽

Sequence Dependent ◽

Granular Particles

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Sequence-dependent formation of intrastrand crosslink products from the UVB irradiation of duplex DNA containing a 5-bromo-2′-deoxyuridine or 5-bromo-2′-deoxycytidine

Nucleic Acids Research ◽

10.1093/nar/gkl892 ◽

2006 ◽

Vol 34 (22) ◽

pp. 6521-6529 ◽

Cited By ~ 36

Author(s):

Yu Zeng ◽

Yinsheng Wang

Keyword(s):

Duplex Dna ◽

Uvb Irradiation ◽

Sequence Dependent

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Sequence-dependent separation of trinucleotides by ion-interaction reversed-phase liquid chromatography—A structure-retention study assisted by soft-modelling and molecular dynamics

Journal of Chromatography A ◽

10.1016/j.chroma.2016.09.060 ◽

2016 ◽

Vol 1469 ◽

pp. 88-95 ◽

Cited By ~ 1

Author(s):

Kamil Mikulášek ◽

Kamil S. Jaroň ◽

Petr Kulhánek ◽

Miroslava Bittová ◽

Jan Havliš

Keyword(s):

Molecular Dynamics ◽

Liquid Chromatography ◽

Reversed Phase ◽

Reversed Phase Liquid Chromatography ◽

Sequence Dependent ◽

Phase Liquid ◽

Structure Retention ◽

Retention Study

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Predicting sequence-dependent melting stability of short duplex DNA oligomers

Biopolymers ◽

10.1002/(sici)1097-0282(1997)44:3<217::aid-bip3>3.0.co;2-y ◽

1997 ◽

Vol 44 (3) ◽

pp. 217-239 ◽

Cited By ~ 112

Author(s):

Richard Owczarzy ◽

Peter M. Vallone ◽

Frank J. Gallo ◽

Teodoro M. Paner ◽

Michael J. Lane ◽

...

Keyword(s):

Duplex Dna ◽

Dna Oligomers ◽

Sequence Dependent

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MD and NMR Analyses of Choline and TMA Binding to Duplex DNA: On the Origins of Aberrant Sequence-Dependent Stability by Alkyl Cations in Aqueous and Water-Free Solvents

Journal of the American Chemical Society ◽

10.1021/ja410698u ◽

2014 ◽

Vol 136 (8) ◽

pp. 3075-3086 ◽

Cited By ~ 29

Author(s):

Guillem Portella ◽

Markus W. Germann ◽

Nicholas V. Hud ◽

Modesto Orozco

Keyword(s):

Duplex Dna ◽

Sequence Dependent ◽

Alkyl Cations

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Chemistry of Sequence-Dependent Remote Guanine Oxidation: Photoreaction of Duplex DNA Containing Cyanobenzophenone-Substituted Uridine

Journal of the American Chemical Society ◽

10.1021/ja9920213 ◽

1999 ◽

Vol 121 (46) ◽

pp. 10854-10855 ◽

Cited By ~ 63

Author(s):

Kazuhiko Nakatani ◽

Chikara Dohno ◽

Isao Saito

Keyword(s):

Duplex Dna ◽

Guanine Oxidation ◽

Sequence Dependent

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Polarizable Force Field for DNA Based on the Classical Drude Oscillator: II. Microsecond Molecular Dynamics Simulations of Duplex DNA

Journal of Chemical Theory and Computation ◽

10.1021/acs.jctc.7b00068 ◽

2017 ◽

Vol 13 (5) ◽

pp. 2072-2085 ◽

Cited By ~ 33

Author(s):

Justin A. Lemkul ◽

Alexander D. MacKerell

Keyword(s):

Molecular Dynamics ◽

Force Field ◽

Molecular Dynamics Simulations ◽

Duplex Dna ◽

Polarizable Force Field ◽

Dynamics Simulations

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Sequence-dependent DNA deformability studied using molecular dynamics simulations

Nucleic Acids Research ◽

10.1093/nar/gkm627 ◽

2007 ◽

Vol 35 (18) ◽

pp. 6063-6074 ◽

Cited By ~ 82

Author(s):

Satoshi Fujii ◽

Hidetoshi Kono ◽

Shigeori Takenaka ◽

Nobuhiro Go ◽

Akinori Sarai

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Sequence Dependent ◽

Dynamics Simulations

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