scholarly journals Population genomic analysis uncovers environmental stress-driven selection and adaptation of Lentinula edodes population in China

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Yang Xiao ◽  
Xuanjin Cheng ◽  
Jun Liu ◽  
Chuang Li ◽  
Wenyan Nong ◽  
...  
Keyword(s):  
Environmental Stress ◽  
Lentinula Edodes ◽  
Genomic Analysis ◽  
Population Genomic

scholarly journals Population Genomic Analysis of ALMS1 in Humans Reveals a Surprisingly Complex Evolutionary History

2009 ◽  
Vol 26 (6) ◽  
pp. 1357-1367 ◽  
Author(s):  
Laura B. Scheinfeldt ◽  
Shameek Biswas ◽  
Jennifer Madeoy ◽  
Caitlin F. Connelly ◽  
Eric E. Schadt ◽  
...  
Keyword(s):  
Evolutionary History ◽  
Genomic Analysis ◽  
Population Genomic ◽  
Complex Evolutionary History

Population genomic analysis reveals domestication of cultivated rye from weedy rye

2021 ◽  
Author(s):  
Yanqing Sun ◽  
Enhui Shen ◽  
Yiyu Hu ◽  
Dongya Wu ◽  
Yu Feng ◽  
...  
Keyword(s):  
Genomic Analysis ◽  
Population Genomic

Comparative population genomic analysis provides insights into breeding of modern indica rice in China

Gene ◽  
2021 ◽  
Vol 768 ◽  
pp. 145303
Author(s):  
Chao Qin ◽  
Yanru Guo ◽  
Jianzhuang Wu ◽  
Long Wang ◽  
Milton Brian Traw ◽  
...  
Keyword(s):  
Indica Rice ◽  
Genomic Analysis ◽  
Population Genomic ◽  
Comparative Population

scholarly journals Understanding pneumococcal serotype 1 biology through population genomic analysis

2016 ◽  
Vol 16 (1) ◽  
Author(s):  
Chrispin Chaguza ◽  
◽  
Jennifer E. Cornick ◽  
Simon R. Harris ◽  
Cheryl P. Andam ◽  
...  
Keyword(s):  
Genomic Analysis ◽  
Population Genomic ◽  
Serotype 1 ◽  
Pneumococcal Serotype

scholarly journals LoRTE: Detecting transposon-induced genomic variants using low coverage PacBio long read sequences

2016 ◽  
Author(s):  
Eric Disdero ◽  
Jonathan Filée
Keyword(s):  
Transposable Elements ◽  
Reference Genome ◽  
Genomic Analysis ◽  
Bioinformatic Tools ◽  
Sequencing Technologies ◽  
Population Genomic ◽  
Long Read ◽  
Different Strains ◽  
Low Coverage ◽  
Ncbi Blast

AbstractMotivationPopulation genomic analysis of transposable elements has greatly benefited from recent advances of sequencing technologies. However, the propensity of transposable elements to nest in highly repeated regions of genomes limits the efficiency of bioinformatic tools when short read sequences technology is used.ResultsLoRTE is the first tool able to use PacBio long read sequences to identify transposon deletions and insertions between a reference genome and genomes of different strains or populations. Tested against Drosophila melanogaster PacBio datasets, LoRTE appears to be a reliable and broadly applicable tools to study the dynamic and evolutionary impact of transposable elements using low coverage, long read sequences.Availability and ImplementationLoRTE is available at http://www.egce.cnrs-gif.fr/?p=6422. It is written in Python 2.7 and only requires the NCBI BLAST + package. LoRTE can be used on standard computer with limited RAM resources and reasonable running time even with large [email protected]

Sign in / Sign up

Export Citation Format

Share Document