scholarly journals αβ T cell receptor germline CDR regions moderate contact with MHC ligands and regulate peptide cross-reactivity

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Meriem Attaf ◽  
Stephan J. Holland ◽  
Istvan Bartok ◽  
Julian Dyson
Immunity ◽  
2015 ◽  
Vol 42 (6) ◽  
pp. 1212-1213 ◽  
Author(s):  
Ryan W. Nelson ◽  
Daniel Beisang ◽  
Noah J. Tubo ◽  
Thamotharampillai Dileepan ◽  
Darin L. Wiesner ◽  
...  

2012 ◽  
Vol 250 (1) ◽  
pp. 10-31 ◽  
Author(s):  
Brian M. Baker ◽  
Daniel R. Scott ◽  
Sydney J. Blevins ◽  
William F. Hawse

1998 ◽  
Vol 188 (10) ◽  
pp. 1867-1874 ◽  
Author(s):  
Gayle M. Davey ◽  
Sonya L. Schober ◽  
Bart T. Endrizzi ◽  
Angela K. Dutcher ◽  
Stephen C. Jameson ◽  
...  

During T cell development, thymocytes which are tolerant to self-peptides but reactive to foreign peptides are selected. The current model for thymocyte selection proposes that self-peptide–major histocompatibility complex (MHC) complexes that bind the T cell receptor with low affinity will promote positive selection while those with high affinity will result in negative selection. Upon thymocyte maturation, such low affinity self-peptide–MHC ligands no longer provoke a response, but foreign peptides can incidentally be high affinity ligands and can therefore stimulate T cells. For this model to work, thymocytes must be more sensitive to ligand than mature T cells. Contrary to this expectation, several groups have shown that thymocytes are less responsive than mature T cells to anti-T cell receptor for antigen (TCR)/CD3 mAb stimulation. Additionally, the lower TCR levels on thymocytes, compared with T cells, would potentially correlate with decreased thymocyte sensitivity. Here we compared preselection thymocytes and mature T cells for early activation events in response to peptide–MHC ligands. Remarkably, the preselection thymocytes were more responsive than mature T cells when stimulated with low affinity peptide variants, while both populations responded equally well to the antigenic peptide. This directly demonstrates the increased sensitivity of thymocytes compared with T cells for TCR engagement by peptide–MHC complexes.


2006 ◽  
Vol 43 (4) ◽  
pp. 346-356 ◽  
Author(s):  
Susan J. Gagnon ◽  
Richard V. Turner ◽  
Michael G. Shiue ◽  
Marale Damirjian ◽  
William E. Biddison

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Cory M. Ayres ◽  
Daniel R. Scott ◽  
Steven A. Corcelli ◽  
Brian M. Baker

2018 ◽  
Author(s):  
Shu-Qi Zhang ◽  
Ke-Yue Ma ◽  
Alexandra A. Schonnesen ◽  
Mingliang Zhang ◽  
Chenfeng He ◽  
...  

We present tetramer-associated T-cell receptor sequencing (TetTCR-Seq), a method to link T cell receptor (TCR) sequences to their cognate antigens in single cells at high throughput. Binding is determined using a library of DNA-barcoded antigen tetramers that is rapidly generated by in vitro transcription and translation. We applied TetTCR-Seq to identify patterns in TCR cross-reactivity with cancer neo-antigens and to rapidly isolate neo-antigen-specific TCRs with no cross-reactivity to the wild-type antigen.


Author(s):  
John-William Sidhom ◽  
Alexander S. Baras

Adaptive Biotechnologies and Microsoft have recently partnered to release ImmuneCode, a database containing SARS-CoV-2 specific T-cell receptors derived through MIRA, a T-cell receptor (TCR) sequencing based sequencing approach to identify antigen-specific TCRs. Herein, we query the extent of cross reactivity between these derived SARS-CoV-2 specific TCRs and other known antigens present in McPas-TCR, a manually curated catalogue of pathology-associated TCRs. We reveal cross reactivity between SARS-CoV-2 specific TCRs and the immunodominant Influenza GILGFVFTL M1 epitope, suggesting the importance of further work in characterizing the implications of prior Influenza exposure or co-exposure to the pathology of SARS-CoV-2 illness.


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