scholarly journals Allochthonous carbon is a major regulator to bacterial growth and community composition in subarctic freshwaters

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Toni Roiha ◽  
Sari Peura ◽  
Mathieu Cusson ◽  
Milla Rautio
2021 ◽  
Author(s):  
Johannes Rousk ◽  
Lettice Hicks

<p>Soil microbial communities perform vital ecosystem functions, such as the decomposition of organic matter to provide plant nutrition. However, despite the functional importance of soil microorganisms, attribution of ecosystem function to particular constituents of the microbial community has been impeded by a lack of information linking microbial function to community composition and structure. Here, we propose a function-first framework to predict how microbial communities influence ecosystem functions.</p><p>We first view the microbial community associated with a specific function as a whole, and describe the dependence of microbial functions on environmental factors (e.g. the intrinsic temperature dependence of bacterial growth rates). This step defines the aggregate functional response curve of the community. Second, the contribution of the whole community to ecosystem function can be predicted, by combining the functional response curve with current environmental conditions. Functional response curves can then be linked with taxonomic data in order to identify sets of “biomarker” taxa that signal how microbial communities regulate ecosystem functions. Ultimately, such indicator taxa may be used as a diagnostic tool, enabling predictions of ecosystem function from community composition.</p><p>In this presentation, we provide three examples to illustrate the proposed framework, whereby the dependence of bacterial growth on environmental factors, including temperature, pH and salinity, is defined as the functional response curve used to interlink soil bacterial community structure and function. Applying this framework will make it possible to predict ecosystem functions directly from microbial community composition.</p>


2021 ◽  
Author(s):  
◽  
Andrew Robert Martin

<p>Sea-ice is a predominant feature of polar oceans and exerts a unique influence on marine ecosystems. The annual circumpolar expansion of sea-ice around Antarctica provides a stable platform for the in situ colonisation and growth of a diverse assemblage of microbes that are integral to the energy base of the Southern Ocean. An active microbial loop has been proposed to operate within the ice matrix connecting bacteria, microalgae and protozoa, but validating this metabolic pathway has historically relied on bulk correlations of chlorophyll a (a surrogate for microalgal biomass) and estimates of bacterial production or abundance. I investigate the microbial loop using a range of physiological, genetic, and ecological techniques to determine whether the photosynthate exuded by phototrophic microalgae serves as a growth substrate for heterotrophic bacteria. This link is examined at a range of spatial (in vitro and in situ experiments) and temporal (8 hours to 18 days) scales by manipulating the supply of algal-derived photosynthate and documenting the subsequent change in bacterial metabolic activity, cell abundance and community composition. Single-cell analysis of both bacterial membrane integrity and intracellular activity revealed that sea ice is among the most productive microbial habitats. In short-term in vitro experiments, increased availability of dissolved organic matter (DOM) was shown to elicit a rapid metabolic response in sea ice bacteria, however single-activity was significantly reduced in treatments where photosynthate was restricted by either removing the majority of algal cells or inhibiting photosynthesis with 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). To verify this metabolic response, microcosm simulations were conducted over a period of 9 days with microbes derived from two regions of the ice (bottom layer and high-salinity surface region) with presumed differences in the concentration of DOM. Metabolic activity was relatively low in bacteria derived from the high-saline region of the ice and in cultures spiked with DCMU, photosynthate limitation restricted bacterial growth and significantly influenced community structure. In contrast, the bottom of the ice is characterised by a high concentration of DOM and bacterial metabolic activity was shown to be higher and DCMU was less influential with respect to changes in bacterial abundance or community composition. To examine in situ microbial dynamics, a series of cores were extracted from Antarctic sea-ice and reinserted into the ice matrix upside down to expose resident microbial assemblages to a significantly different light, temperature and salinity regime. Limited assimilation of algal-derived DOM by bacteria in ice cores that were flipped illustrated a malfunction in the microbial loop after a period of 18 days. Bacteria originally at the bottom of the sea ice appeared to be temperature-limited, while a lack of growth in cells originally at the top of the ice profile was attributed to a community dominated by slow-growing psychrophilic species. A stronger physiological response to disturbance was elicited by microalgae and significant growth was contrasted with severe bleaching and cell death. This reciprocal transplant is the first of its kind to examine the in situ sea ice community and illustrats that although microbial assemblages are similar with respect to trophic dynamics, they are also attuned to distinct regions within the ice. The bacterial assimilation of algal-derived DOM is of fundamental importance to the microbial loop and by confirming that photosynthate is a major stimulus for bacterial growth, these results provide a new and unique insight into microbial dynamics in Antarctic sea-ice.</p>


2021 ◽  
Author(s):  
Carla Cruz Paredes ◽  
Daniel Tajmel ◽  
Johannes Rousk

&lt;p&gt;Temperature is one of the most important environmental factors controlling both microbial growth and respiration. Warmer temperatures accelerate the rate at which microorganisms respire. Therefore, it is expected that climate warming will induce losses of carbon to the atmosphere through soil microbial respiration, representing a positive feedback to climate warming. However, there are multiple gaps in our understanding on responses of microorganisms to warming. For instance, long-term experiments have shown that the increase in soil respiration found in warming experiments diminishes with time, recovering to ambient values. This suggests that soil C losses might not be as extensive as previously suggested. This can be due to substrate depletion or shifts in the microbial community composition that led to thermal adaptation. To test thermal adaptation of soil microbial communities to their climate, variation along latitudinal gradients is a useful context. Such geographical gradients have long-term and large temperature differences thus patterns in thermal adaptation should have had sufficient time for ecological and evolutionary processes to act, allowing us to test if soil microbial communities have adapted to thermal regimes.&lt;/p&gt;&lt;p&gt;We investigated a latitudinal gradient across Europe with 76 sites that spanned a gradient of decadal mean annual temperature (MAT) from -3.1 to 18.3&amp;#176;C. We investigated if respiration, bacterial and fungal growth responses were adapted to long-term temperature differences in this gradient. We did this by estimating the temperature dependences of bacterial growth, fungal growth and respiration. We determined the temperature sensitivity (Q&lt;sub&gt;10&lt;/sub&gt;), the minimum temperature (T&lt;sub&gt;min&lt;/sub&gt;) for growth and the optimum temperature (T&lt;sub&gt;opt&lt;/sub&gt;) for growth. These metrics were then correlated to MAT. Additionally, we sequenced bacterial (16S) and fungal (ITS) amplicons from the different sites to also assess variance in community composition and structure. We hypothesized that microbes should be adapted to their historical temperature; microbial communities in warmer environments will be warm-shifted and vice versa.&lt;/p&gt;&lt;p&gt;We could effectively represent temperature relationships for bacterial growth, fungal growth, and respiration for all soils. As expected, temperature relationships correlated with the environmental temperature of the site, such that higher temperatures resulted in microbial communities with warm-adapted growth and respiration. This could be seen as a strong positive correlation between T&lt;sub&gt;min&lt;/sub&gt; values and environmental temperatures which range from -14 to -5&amp;#176;C for bacteria, -11.5 to -4&amp;#176;C for fungi and -8 to -2&amp;#176;C for respiration. We found that MAT explains the microbial communities&amp;#8217; temperature dependencies for bacterial growth and respiration, but not for fungal growth. With 1&amp;#176;C rise in MAT, T&lt;sub&gt;min&lt;/sub&gt; increased 0.17&amp;#176;C for bacterial growth, while T&lt;sub&gt;min&lt;/sub&gt; for respiration increased by 0.11. Similarly, bacterial and fungal communities&amp;#8217; composition were correlated with MAT (r&lt;sup&gt;2&lt;/sup&gt;=0.38; r&lt;sup&gt;2&lt;/sup&gt;=0.62), and T&lt;sub&gt;min&lt;/sub&gt; (r&lt;sup&gt;2&lt;/sup&gt;=0.16; r&lt;sup&gt;2&lt;/sup&gt;=0.21). These findings suggest that thermal adaptation occurs in processes such as bacterial growth and respiration, probably due to shifts in the microbial community composition. However, fungal growth seems to be less sensitive to changes in temperature, even though fungal communities&amp;#8217; composition was correlated with MAT.&lt;/p&gt;


Ecosystems ◽  
2006 ◽  
Vol 9 (3) ◽  
pp. 489-499 ◽  
Author(s):  
Emma S. Kritzberg ◽  
Jonathan J. Cole ◽  
Michael M. Pace ◽  
Wilhelm Granéli

2021 ◽  
Author(s):  
◽  
Andrew Robert Martin

<p>Sea-ice is a predominant feature of polar oceans and exerts a unique influence on marine ecosystems. The annual circumpolar expansion of sea-ice around Antarctica provides a stable platform for the in situ colonisation and growth of a diverse assemblage of microbes that are integral to the energy base of the Southern Ocean. An active microbial loop has been proposed to operate within the ice matrix connecting bacteria, microalgae and protozoa, but validating this metabolic pathway has historically relied on bulk correlations of chlorophyll a (a surrogate for microalgal biomass) and estimates of bacterial production or abundance. I investigate the microbial loop using a range of physiological, genetic, and ecological techniques to determine whether the photosynthate exuded by phototrophic microalgae serves as a growth substrate for heterotrophic bacteria. This link is examined at a range of spatial (in vitro and in situ experiments) and temporal (8 hours to 18 days) scales by manipulating the supply of algal-derived photosynthate and documenting the subsequent change in bacterial metabolic activity, cell abundance and community composition. Single-cell analysis of both bacterial membrane integrity and intracellular activity revealed that sea ice is among the most productive microbial habitats. In short-term in vitro experiments, increased availability of dissolved organic matter (DOM) was shown to elicit a rapid metabolic response in sea ice bacteria, however single-activity was significantly reduced in treatments where photosynthate was restricted by either removing the majority of algal cells or inhibiting photosynthesis with 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). To verify this metabolic response, microcosm simulations were conducted over a period of 9 days with microbes derived from two regions of the ice (bottom layer and high-salinity surface region) with presumed differences in the concentration of DOM. Metabolic activity was relatively low in bacteria derived from the high-saline region of the ice and in cultures spiked with DCMU, photosynthate limitation restricted bacterial growth and significantly influenced community structure. In contrast, the bottom of the ice is characterised by a high concentration of DOM and bacterial metabolic activity was shown to be higher and DCMU was less influential with respect to changes in bacterial abundance or community composition. To examine in situ microbial dynamics, a series of cores were extracted from Antarctic sea-ice and reinserted into the ice matrix upside down to expose resident microbial assemblages to a significantly different light, temperature and salinity regime. Limited assimilation of algal-derived DOM by bacteria in ice cores that were flipped illustrated a malfunction in the microbial loop after a period of 18 days. Bacteria originally at the bottom of the sea ice appeared to be temperature-limited, while a lack of growth in cells originally at the top of the ice profile was attributed to a community dominated by slow-growing psychrophilic species. A stronger physiological response to disturbance was elicited by microalgae and significant growth was contrasted with severe bleaching and cell death. This reciprocal transplant is the first of its kind to examine the in situ sea ice community and illustrats that although microbial assemblages are similar with respect to trophic dynamics, they are also attuned to distinct regions within the ice. The bacterial assimilation of algal-derived DOM is of fundamental importance to the microbial loop and by confirming that photosynthate is a major stimulus for bacterial growth, these results provide a new and unique insight into microbial dynamics in Antarctic sea-ice.</p>


2003 ◽  
Vol 69 (7) ◽  
pp. 3701-3709 ◽  
Author(s):  
Alexander Eiler ◽  
Silke Langenheder ◽  
Stefan Bertilsson ◽  
Lars J. Tranvik

ABSTRACT Batch cultures of aquatic bacteria and dissolved organic matter were used to examine the impact of carbon source concentration on bacterial growth, biomass, growth efficiency, and community composition. An aged concentrate of dissolved organic matter from a humic lake was diluted with organic compound-free artificial lake water to obtain concentrations of dissolved organic carbon (DOC) ranging from 0.04 to 2.53 mM. The bacterial biomass produced in the cultures increased linearly with the DOC concentration, indicating that bacterial biomass production was limited by the supply of carbon. The bacterial growth rate in the exponential growth phase exhibited a hyperbolic response to the DOC concentration, suggesting that the maximum growth rate was constrained by the substrate concentration at low DOC concentrations. Likewise, the bacterial growth efficiency calculated from the production of biomass and CO2 increased asymptotically from 0.4 to 10.4% with increasing DOC concentration. The compositions of the microbial communities that emerged in the cultures were assessed by separation of PCR-amplified 16S rRNA fragments by denaturing gradient gel electrophoresis. Nonmetric multidimensional scaling of the gel profiles showed that there was a gradual change in the community composition along the DOC gradient; members of the β subclass of the class Proteobacteria and members of the Cytophaga-Flavobacterium group were well represented at all concentrations, whereas members of the α subclass of the Proteobacteria were found exclusively at the lowest carbon concentration. The shift in community composition along the DOC gradient was similar to the patterns of growth efficiency and growth rate. The results suggest that the bacterial growth efficiencies, the rates of bacterial growth, and the compositions of bacterial communities are not constrained by substrate concentrations in most natural waters, with the possible exception of the most oligotrophic environments.


2019 ◽  
Vol 22 (1) ◽  
pp. 369-380
Author(s):  
Zuriñe Baña ◽  
Naiara Abad ◽  
Ainhoa Uranga ◽  
Iñigo Azúa ◽  
Itxaso Artolozaga ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document