scholarly journals Positional distribution of transcription factor binding sites in Arabidopsis thaliana

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Chun-Ping Yu ◽  
Jinn-Jy Lin ◽  
Wen-Hsiung Li
Keyword(s):  
Arabidopsis Thaliana ◽  
Transcription Factor ◽  
Binding Sites ◽  
Positional Distribution ◽  
Transcription Factor Binding Sites ◽  
Transcription Factor Binding ◽  
Factor Binding

scholarly journals STIFDB—Arabidopsis Stress Responsive Transcription Factor DataBase

2009 ◽  
Vol 2009 ◽  
pp. 1-8 ◽  
Author(s):  
K. Shameer ◽  
S. Ambika ◽  
Susan Mary Varghese ◽  
N. Karaba ◽  
M. Udayakumar ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Transcription Factor ◽  
Transcription Factors ◽  
Abiotic Stress ◽  
Stress Responses ◽  
Binding Sites ◽  
Transcription Factor Binding Sites ◽  
Transcription Factor Binding ◽  
Factor Binding ◽  
Stress Responsive Genes

Elucidating the key players of molecular mechanism that mediate the complex stress-responses in plants system is an important step to develop improved variety of stress tolerant crops. Understanding the effects of different types of biotic and abiotic stress is a rapidly emerging domain in the area of plant research to develop better, stress tolerant plants. Information about the transcription factors, transcription factor binding sites, function annotation of proteins coded by genes expressed during abiotic stress (for example: drought, cold, salinity, excess light, abscisic acid, and oxidative stress) response will provide better understanding of this phenomenon. STIFDB is a database of abiotic stress responsive genes and their predicted abiotic transcription factor binding sites in Arabidopsis thaliana. We integrated 2269 genes upregulated in different stress related microarray experiments and surveyed their 1000 bp and 100 bp upstream regions and 5′UTR regions using the STIF algorithm and identified putative abiotic stress responsive transcription factor binding sites, which are compiled in the STIFDB database. STIFDB provides extensive information about various stress responsive genes and stress inducible transcription factors of Arabidopsis thaliana. STIFDB will be a useful resource for researchers to understand the abiotic stress regulome and transcriptome of this important model plant system.

scholarly journals STIF: Identification of stress-upregulated transcription factor binding sites in Arabidopsis thaliana

2008 ◽  
Vol 2 (10) ◽  
pp. 431-437 ◽  
Author(s):  
Ambika Shyam Sundar ◽  
Susan Mary Varghese ◽  
Khader Shameer ◽  
Nataraja Karaba ◽  
Makarla Udayakumar ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Transcription Factor ◽  
Binding Sites ◽  
Transcription Factor Binding Sites ◽  
Transcription Factor Binding ◽  
Factor Binding
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