scholarly journals The RecQ DNA helicase Rqh1 constrains Exonuclease 1-dependent recombination at stalled replication forks

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Fekret Osman ◽  
Jong Sook Ahn ◽  
Alexander Lorenz ◽  
Matthew C. Whitby
Keyword(s):  
Dna Helicase ◽  
Replication Forks ◽  
Exonuclease 1 ◽  
Stalled Replication Forks

scholarly journals Interactions and Localization of Escherichia coli Error-Prone DNA Polymerase IV after DNA Damage

2015 ◽  
Vol 197 (17) ◽  
pp. 2792-2809 ◽  
Author(s):  
Sarita Mallik ◽  
Ellen M. Popodi ◽  
Andrew J. Hanson ◽  
Patricia L. Foster
Keyword(s):  
Dna Damage ◽  
Dna Polymerase ◽  
Dna Helicase ◽  
Dna Lesions ◽  
Replication Forks ◽  
Content Type ◽  
Pol Iv ◽  
Dna Polymerase Iv ◽  
Stalled Replication Forks

ABSTRACTEscherichia coli's DNA polymerase IV (Pol IV/DinB), a member of the Y family of error-prone polymerases, is induced during the SOS response to DNA damage and is responsible for translesion bypass and adaptive (stress-induced) mutation. In this study, the localization of Pol IV after DNA damage was followed using fluorescent fusions. After exposure ofE. colito DNA-damaging agents, fluorescently tagged Pol IV localized to the nucleoid as foci. Stepwise photobleaching indicated ∼60% of the foci consisted of three Pol IV molecules, while ∼40% consisted of six Pol IV molecules. Fluorescently tagged Rep, a replication accessory DNA helicase, was recruited to the Pol IV foci after DNA damage, suggesting that thein vitrointeraction between Rep and Pol IV reported previously also occursin vivo. Fluorescently tagged RecA also formed foci after DNA damage, and Pol IV localized to them. To investigate if Pol IV localizes to double-strand breaks (DSBs), an I-SceI endonuclease-mediated DSB was introduced close to a fluorescently labeled LacO array on the chromosome. After DSB induction, Pol IV localized to the DSB site in ∼70% of SOS-induced cells. RecA also formed foci at the DSB sites, and Pol IV localized to the RecA foci. These results suggest that Pol IV interacts with RecAin vivoand is recruited to sites of DSBs to aid in the restoration of DNA replication.IMPORTANCEDNA polymerase IV (Pol IV/DinB) is an error-prone DNA polymerase capable of bypassing DNA lesions and aiding in the restart of stalled replication forks. In this work, we demonstratein vivolocalization of fluorescently tagged Pol IV to the nucleoid after DNA damage and to DNA double-strand breaks. We show colocalization of Pol IV with two proteins: Rep DNA helicase, which participates in replication, and RecA, which catalyzes recombinational repair of stalled replication forks. Time course experiments suggest that Pol IV recruits Rep and that RecA recruits Pol IV. These findings providein vivoevidence that Pol IV aids in maintaining genomic stability not only by bypassing DNA lesions but also by participating in the restoration of stalled replication forks.

scholarly journals DisA limits RecA- and RadA/Sms-mediated replication fork remodelling to prevent genome instability

2020 ◽  
Author(s):  
Rubén Torres ◽  
Juan C. Alonso
Keyword(s):  
Genome Instability ◽  
Dna Helicase ◽  
Template Switching ◽  
Replication Forks ◽  
Lesion Bypass ◽  
Branched Dna ◽  
Subject Categories ◽  
Negative Effect ◽  
Dna Replication Stress ◽  
Stalled Replication Forks

AbstractThe DisA diadenylate cyclase (DAC), the DNA helicase RadA/Sms and the RecA recombinase are required to prevent a DNA replication stress during the revival of haploid Bacillus subtilis spores. Moreover, disA, radA and recA are epistatic among them in response to DNA damage. We show that DisA inhibits the ATPase activity of RadA/Sms C13A by competing for single-stranded (ss) DNA. In addition, DisA inhibits the helicase activity of RadA/Sms. RecA filamented onto ssDNA interacts with and recruits DisA and RadA/Sms onto branched DNA intermediates. In fact, RecA binds a reversed fork and facilitates RadA/Sms-mediated unwinding to restore a 3′-fork intermediate, but DisA inhibits it. Finally, RadA/Sms inhibits DisA DAC activity, but RecA counters this negative effect. We propose that RecA, DisA and RadA/Sms interactions, which are mutually exclusive, limit remodelling of stalled replication forks. DisA, in concert with RecA and/or RadA/Sms, indirectly contributes to template switching or lesion bypass, prevents fork breakage and facilitates the recovery of c-di-AMP levels to re-initiate cell proliferation.Subject CategoriesGenomic stability & Dynamics

scholarly journals Metnase Mediates Loading of Exonuclease 1 onto Single Strand Overhang DNA for End Resection at Stalled Replication Forks

2016 ◽  
Vol 292 (4) ◽  
pp. 1414-1425 ◽  
Author(s):  
Hyun-Suk Kim ◽  
Elizabeth A. Williamson ◽  
Jac A. Nickoloff ◽  
Robert A. Hromas ◽  
Suk-Hee Lee
Keyword(s):  
Single Strand ◽  
Replication Forks ◽  
Exonuclease 1 ◽  
Stalled Replication Forks ◽  
End Resection

scholarly journals Human HEL308 Localizes to Damaged Replication Forks and Unwinds Lagging Strand Structures

2011 ◽  
Vol 286 (18) ◽  
pp. 15832-15840 ◽  
Author(s):  
Agnieszka A. Tafel ◽  
Leonard Wu ◽  
Peter J. McHugh
Keyword(s):  
Protein A ◽  
Dna Helicase ◽  
Replication Forks ◽  
Double Stranded Dna ◽  
Replication Restart ◽  
Two Factors ◽  
Interstrand Cross Links ◽  
Cross Links ◽  
Stalled Replication Forks ◽  
Lagging Strand

HEL308 is a superfamily II DNA helicase, conserved from archaea through to humans. HEL308 family members were originally isolated by their similarity to the Drosophila melanogaster Mus308 protein, which contributes to the repair of replication-blocking lesions such as DNA interstrand cross-links. Biochemical studies have established that human HEL308 is an ATP-dependent enzyme that unwinds DNA with a 3′ to 5′ polarity, but little else is know about its mechanism. Here, we show that GFP-tagged HEL308 localizes to replication forks following camptothecin treatment. Moreover, HEL308 colocalizes with two factors involved in the repair of damaged forks by homologous recombination, Rad51 and FANCD2. Purified HEL308 requires a 3′ single-stranded DNA region to load and unwind duplex DNA structures. When incubated with substrates that model stalled replication forks, HEL308 preferentially unwinds the parental strands of a structure that models a fork with a nascent lagging strand, and the unwinding action of HEL308 is specifically stimulated by human replication protein A. Finally, we show that HEL308 appears to target and unwind from the junction between single-stranded to double-stranded DNA on model fork structures. Together, our results suggest that one role for HEL308 at sites of blocked replication might be to open up the parental strands to facilitate the loading of subsequent factors required for replication restart.

scholarly journals Bloom syndrome cells undergo p53-dependent apoptosis and delayed assembly of BRCA1 and NBS1 repair complexes at stalled replication forks

2003 ◽  
Vol 162 (7) ◽  
pp. 1197-1209 ◽  
Author(s):  
Albert R. Davalos ◽  
Judith Campisi
Keyword(s):  
Human Fibroblasts ◽  
Postnatal Growth ◽  
Bloom Syndrome ◽  
Dna Helicase ◽  
Dominant Negative ◽  
Replication Forks ◽  
Dna Breaks ◽  
Early Responder ◽  
Dominant Negative Activity ◽  
Stalled Replication Forks

Bloom syndrome (BS) is a hereditary disorder characterized by pre- and postnatal growth retardation, genomic instability, and cancer. BLM, the gene defective in BS, encodes a DNA helicase thought to participate in genomic maintenance. We show that BS human fibroblasts undergo extensive apoptosis after DNA damage specifically when DNA replication forks are stalled. Damage during S, but not G1, caused BLM to rapidly form foci with γH2AX at replication forks that develop DNA breaks. These BLM foci recruited BRCA1 and NBS1. Damaged BS cells formed BRCA1/NBS1 foci with markedly delayed kinetics. Helicase-defective BLM showed dominant-negative activity with respect to apoptosis, but not BRCA1/NBS1 recruitment, suggesting catalytic and structural roles for BLM. Strikingly, inactivation of p53 prevented the death of damaged BS cells and delayed recruitment of BRCA1/NBS1. These findings suggest that BLM is an early responder to damaged replication forks. Moreover, p53 eliminates cells that rapidly assemble BRCA1/NBS1 without BLM, suggesting that BLM is essential for timely BRCA1/NBS1 function.

scholarly journals 14-3-3 Proteins Regulate Exonuclease 1–Dependent Processing of Stalled Replication Forks

PLoS Genetics ◽  
2011 ◽  
Vol 7 (4) ◽  
pp. e1001367 ◽  
Author(s):  
Kim Engels ◽  
Michele Giannattasio ◽  
Marco Muzi-Falconi ◽  
Massimo Lopes ◽  
Stefano Ferrari
Keyword(s):  
Replication Forks ◽  
Exonuclease 1 ◽  
Stalled Replication Forks
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