scholarly journals Shifts in methanogen community structure and function across a coastal marsh transect: effects of exotic Spartina alterniflora invasion

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Junji Yuan ◽  
Weixin Ding ◽  
Deyan Liu ◽  
Hojeong Kang ◽  
Jian Xiang ◽  
...  
Keyword(s):  
Community Structure ◽  
Spartina Alterniflora ◽  
Structure And Function ◽  
Coastal Marsh ◽  
Methanogen Community ◽  
And Function ◽  
Spartina Alterniflora Invasion

Shifts in methanogen community structure and function associated with long-term manipulation of sulfate and salinity in a hypersaline microbial mat

2008 ◽  
Vol 10 (2) ◽  
pp. 386-394 ◽  
Author(s):  
Jason M. Smith ◽  
Stefan J. Green ◽  
Cheryl A. Kelley ◽  
Leslie Prufert-Bebout ◽  
Brad M. Bebout
Keyword(s):  
Community Structure ◽  
Structure And Function ◽  
Microbial Mat ◽  
Methanogen Community ◽  
And Function

scholarly journals The Relationship between the Community Structure and Function of Bacterioplankton and the Environmental Response in Qingcaosha Reservoir

Water ◽  
2021 ◽  
Vol 13 (22) ◽  
pp. 3155
Author(s):  
Shumin Liu ◽  
Fengbin Zhao ◽  
Xin Fang
Keyword(s):  
Water Quality ◽  
Community Structure ◽  
High Throughput Sequencing ◽  
Scientific Basis ◽  
Vital Role ◽  
Structure And Function ◽  
Environmental Response ◽  
Temporal And Spatial ◽  
Density And Biomass ◽  
And Function

Phytoplankton and bacterioplankton play a vital role in the structure and function of aquatic ecosystems, and their activity is closely linked to water eutrophication. However, few researchers have considered the temporal and spatial succession of phytoplankton and bacterioplankton, and their responses to environmental factors. The temporal and spatial succession of bacterioplankton and their ecological interaction with phytoplankton and water quality were analyzed using 16S rDNA high-throughput sequencing for their identification, and the functions of bacterioplankton were predicted. The results showed that the dominant classes of bacterioplankton in the Qingcaosha Reservoir were Gammaproteobacteria, Alphaproteobacteria, Actinomycetes, Acidimicrobiia, and Cyanobacteria. In addition, the Shannon diversity indexes were compared, and the results showed significant temporal differences based on monthly averaged value, although no significant spatial difference. The community structure was found to be mainly influenced by phytoplankton density and biomass, dissolved oxygen, and electrical conductivity. The presence of Pseudomonas and Legionella was positively correlated with that of Pseudanabaena sp., and Sphingomonas and Paragonimus with Melosira granulata. On the contrary, the presence of Planctomycetes was negatively correlated with Melosira granulata, as was Deinococcus-Thermus with Cyclotella sp. The relative abundance of denitrifying bacteria decreased from April to December, while the abundance of nitrogen-fixing bacteria increased. This study provides a scientific basis for understanding the ecological interactions between bacteria, algae, and water quality in reservoir ecosystems.

scholarly journals The plant circadian clock influences rhizosphere community structure and function

2017 ◽  
Author(s):  
Charley J. Hubbard ◽  
Marcus T. Brock ◽  
Linda T.A. van Diepen ◽  
Loïs Maignien ◽  
Brent E. Ewers ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Circadian Clock ◽  
Structure And Function ◽  
Plant Performance ◽  
Wild Type ◽  
Night Time ◽  
History Of ◽  
And Function ◽  
Rhizosphere Community

AbstractPlants alter chemical and physical properties of soil, and thereby influence rhizosphere microbial community structure. The structure of microbial communities may in turn affect plant performance. Yet, outside of simple systems with pairwise interacting partners, the plant genetic pathways that influence microbial community structure remain largely unknown, as are the performance feedbacks of microbial communities selected by the host plant genotype. We investigated the role of the plant circadian clock in shaping rhizosphere community structure and function. We performed 16S rRNA gene sequencing to characterize rhizosphere bacterial communities of Arabidopsis thaliana between day and night time points, and tested for differences in community structure between wild-type (Ws) vs. clock mutant (toc1-21, ztl-30) genotypes. We then characterized microbial community function, by growing wild-type plants in soils with an overstory history of Ws, toc1-21 or ztl-30 and measuring plant performance. We observed that rhizosphere community structure varied between day and night time points, and clock misfunction significantly altered rhizosphere communities. Finally, wild-type plants germinated earlier and were larger when inoculated with soils having an overstory history of wild-type in comparison to clock mutant genotypes. Our findings suggest the circadian clock of the plant host influences rhizosphere community structure and function.

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