scholarly journals Widespread Positive Selection Drives Differentiation of Centromeric Proteins in the Drosophila melanogaster subgroup

2015 ◽  
Vol 5 (1) ◽  
Author(s):  
Emily A. Beck ◽  
Ana Llopart
Keyword(s):  
Drosophila Melanogaster ◽  
Positive Selection ◽  
Drosophila Melanogaster Subgroup ◽  
Centromeric Proteins

scholarly journals Molecular Evolution of Duplicated Amylase Gene Regions in Drosophila melanogaster: Evidence of Positive Selection in the Coding Regions and Selective Constraints in the cis-Regulatory Regions

Genetics ◽  
2001 ◽  
Vol 157 (2) ◽  
pp. 667-677
Author(s):  
Hitoshi Araki ◽  
Nobuyuki Inomata ◽  
Tsuneyuki Yamazaki
Keyword(s):  
Drosophila Melanogaster ◽  
Molecular Evolution ◽  
Positive Selection ◽  
Natural Populations ◽  
Sliding Window ◽  
Selective Constraint ◽  
Proximal Region ◽  
Coding Regions ◽  
Asian Populations ◽  
Flanking Region

Abstract In this study, we randomly sampled Drosophila melanogaster from Japanese and Kenyan natural populations. We sequenced duplicated (proximal and distal) Amy gene regions to test whether the patterns of polymorphism were consistent with neutral molecular evolution. Fst between the two geographically distant populations, estimated from Amy gene regions, was 0.084, smaller than reported values for other loci, comparing African and Asian populations. Furthermore, little genetic differentiation was found at a microsatellite locus (DROYANETSB) in these samples (Gst′=−0.018). The results of several tests (Tajima's, Fu and Li's, and Wall's tests) were not significantly different from neutrality. However, a significantly higher level of fixed replacement substitutions was detected by a modified McDonald and Kreitman test for both populations. This indicates that positive selection occurred during or immediately after the speciation of D. melanogaster. Sliding-window analysis showed that the proximal region 1, a part of the proximal 5′ flanking region, was conserved between D. melanogaster and its sibling species, D. simulans. An HKA test was significant when the proximal region 1 was compared with the 5′ flanking region of Alcohol dehydrogenase (Adh), indicating a severe selective constraint on the Amy proximal region 1. These results suggest that natural selection has played an important role in the molecular evolution of Amy gene regions in D. melanogaster.

Rates and patterns of scnDNA and mtDNA divergence within the Drosophila melanogaster subgroup.

Genetics ◽  
1988 ◽  
Vol 118 (4) ◽  
pp. 671-683
Author(s):  
A Caccone ◽  
G D Amato ◽  
J R Powell
Keyword(s):  
Drosophila Melanogaster ◽  
Dna Hybridization ◽  
Nuclear Dna ◽  
Single Copy ◽  
Rate Of Change ◽  
Drosophila Genome ◽  
Island Species ◽  
Drosophila Melanogaster Subgroup ◽  
Chromosomal Data ◽  
Group 2

Abstract Levels of DNA divergence among the eight species of the Drosophila melanogaster subgroup and D. takahashii have been determined using the technique of DNA-DNA hybridization. Two types of DNA were used: single-copy nuclear DNA (scnDNA) and mitochondrial DNA (mtDNA). The major findings are: (1) A phylogeny has been derived for the group based on scnDNA which is congruent with chromosomal data, morphology, and behavior. The three homosequential species, simulans, sechellia, and mauritiana, are very closely related; the scnDNA divergence indicate the two island species are a monophyletic group. (2) The rates of change of scnDNA and mtDNA are not greatly different; if anything scnDNA evolves faster than mtDNA. (3) The rates of scnDNA evolution are not closely correlated to chromosomal (inversion) evolution. (4) The Drosophila genome appears to consist of two distinct classes of scnDNA with respect to rate of evolutionary change, a very rapidly evolving fraction and a relatively conservative fraction. (5) The absolute rate of change was estimated to be at least 1.7% nucleotide substitution per one million years. (6) DNA distance estimates based on restriction site variation are correlated with distances based on DNA-DNA hybridization, although the correlation is not very strong.

Evolution of the Gypsy Endogenous Retrovirus in the Drosophila melanogaster Subgroup

2000 ◽  
Vol 17 (6) ◽  
pp. 908-914 ◽  
Author(s):  
Christophe Terzian ◽  
Concepcion Ferraz ◽  
Jacques Demaille ◽  
Alain Bucheton
Keyword(s):  
Drosophila Melanogaster ◽  
Endogenous Retrovirus ◽  
Drosophila Melanogaster Subgroup
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