scholarly journals Signatures of selection in tilapia revealed by whole genome resequencing

2015 ◽  
Vol 5 (1) ◽  
Author(s):  
Jun Hong Xia ◽  
Zhiyi Bai ◽  
Zining Meng ◽  
Yong Zhang ◽  
Le Wang ◽  
...  
Keyword(s):  
Whole Genome ◽  
Genome Resequencing ◽  
Signatures Of Selection ◽  
Whole Genome Resequencing

Whole-genome resequencing of Dulong Chicken reveal signatures of selection

2020 ◽  
Vol 61 (6) ◽  
pp. 624-631 ◽  
Author(s):  
Q. Wang ◽  
D. Li ◽  
A. Guo ◽  
M. Li ◽  
L. Li ◽  
...  
Keyword(s):  
Whole Genome ◽  
Genome Resequencing ◽  
Signatures Of Selection ◽  
Whole Genome Resequencing

scholarly journals Whole-Genome Resequencing Analysis of Hanwoo and Yanbian Cattle to Identify Genome-Wide SNPs and Signatures of Selection

2015 ◽  
Vol 38 (5) ◽  
pp. 466-473 ◽  
Author(s):  
Jung-Woo Choi ◽  
Bong-Hwan Choi ◽  
Seung-Hwan Lee ◽  
Seung-Soo Lee ◽  
Hyeong-Cheol Kim ◽  
...  
Keyword(s):  
Whole Genome ◽  
Genome Resequencing ◽  
Genome Wide ◽  
Signatures Of Selection ◽  
Whole Genome Resequencing

scholarly journals Whole-genome resequencing of Xishuangbanna fighting chicken to identify signatures of selection

2016 ◽  
Vol 48 (1) ◽  
Author(s):  
Xing Guo ◽  
Qi Fang ◽  
Chendong Ma ◽  
Bangyuan Zhou ◽  
Yi Wan ◽  
...  
Keyword(s):  
Whole Genome ◽  
Genome Resequencing ◽  
Signatures Of Selection ◽  
Whole Genome Resequencing

scholarly journals Identification of Signatures of Selection by Whole-Genome Resequencing of a Chinese Native Pig

2020 ◽  
Vol 11 ◽  
Author(s):  
Wei Zhang ◽  
Min Yang ◽  
Mei Zhou ◽  
Yuanlang Wang ◽  
Xudong Wu ◽  
...  
Keyword(s):  
Whole Genome ◽  
Genome Resequencing ◽  
Signatures Of Selection ◽  
Whole Genome Resequencing

scholarly journals Whole-genome resequencing reveals signatures of selection and timing of duck domestication

GigaScience ◽  
2018 ◽  
Vol 7 (4) ◽  
Author(s):  
Zebin Zhang ◽  
Yaxiong Jia ◽  
Pedro Almeida ◽  
Judith E Mank ◽  
Marcel van Tuinen ◽  
...  
Keyword(s):  
Whole Genome ◽  
Genome Resequencing ◽  
Signatures Of Selection ◽  
Whole Genome Resequencing

scholarly journals Whole genome resequencing and custom genotyping unveil clonal lineages in ‘Malbec’ grapevines (Vitis vinifera L.)

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Luciano Calderón ◽  
Nuria Mauri ◽  
Claudio Muñoz ◽  
Pablo Carbonell-Bejerano ◽  
Laura Bree ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Somatic Mutations ◽  
Clonal Propagation ◽  
Variant Calling ◽  
Vitis Vinifera L ◽  
Whole Genome ◽  
Single Nucleotide Variants ◽  
Genome Resequencing ◽  
Diversity Pattern ◽  
Whole Genome Resequencing

AbstractGrapevine cultivars are clonally propagated to preserve their varietal attributes. However, genetic variations accumulate due to the occurrence of somatic mutations. This process is anthropically influenced through plant transportation, clonal propagation and selection. Malbec is a cultivar that is well-appreciated for the elaboration of red wine. It originated in Southwestern France and was introduced in Argentina during the 1850s. In order to study the clonal genetic diversity of Malbec grapevines, we generated whole-genome resequencing data for four accessions with different clonal propagation records. A stringent variant calling procedure was established to identify reliable polymorphisms among the analyzed accessions. The latter procedure retrieved 941 single nucleotide variants (SNVs). A reduced set of the detected SNVs was corroborated through Sanger sequencing, and employed to custom-design a genotyping experiment. We successfully genotyped 214 Malbec accessions using 41 SNVs, and identified 14 genotypes that clustered in two genetically divergent clonal lineages. These lineages were associated with the time span of clonal propagation of the analyzed accessions in Argentina and Europe. Our results show the usefulness of this approach for the study of the scarce intra-cultivar genetic diversity in grapevines. We also provide evidence on how human actions might have driven the accumulation of different somatic mutations, ultimately shaping the Malbec genetic diversity pattern.

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