scholarly journals Generation of mouse ES cell lines engineered for the forced induction of transcription factors

2011 ◽  
Vol 1 (1) ◽  
Author(s):  
Lina S. Correa-Cerro ◽  
Yulan Piao ◽  
Alexei A. Sharov ◽  
Akira Nishiyama ◽  
Jean S. Cadet ◽  
...  
2005 ◽  
Vol 29 (2) ◽  
pp. 139-146 ◽  
Author(s):  
J KRAMER ◽  
C HEGERT ◽  
G HARGUS ◽  
J ROHWEDEL

2009 ◽  
Vol 53 (7) ◽  
pp. 1045-1051 ◽  
Author(s):  
Liesbeth Vermeire ◽  
Abdelilah Ibrahimi ◽  
Thierry Voet ◽  
Lieve Umans ◽  
Kathleen Coddens ◽  
...  
Keyword(s):  
Es Cell ◽  

Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 5267-5267
Author(s):  
Zwi N. Berneman ◽  
Jeremy P. Brown ◽  
Sjaak Van der Sar ◽  
Dave Van den Plas ◽  
Lena Van den Eeden ◽  
...  

Abstract BACKGROUND: Development of efficient non-viral gene transfer technologies for embryonic stem (ES) cells is urgently needed for various existing and new ES cell-based research strategies. In this study we investigated mRNA electroporation as a tool for short-term gene transfer in both mouse and human ES cells. METHODS: Culture and mRNA electroporation conditions for feeder-free cultured mouse and human ES cells were optimized on three mouse ES cell lines (E14, R1 and HM-1) and one human ES cell line (H9). After electroporation with EGFP mRNA, transfected ES cell populations were analyzed by FACS for EGFP expression, viability and phenotype. Also, stably-transfected mouse ES cell lines containing Lox-P or FRT-flanked reporter genes were electroporated with mRNA encoding Cre- or FLPe-recombinase proteins. Monitoring recombination efficiency was done based on the appearance and/or disappearance of fluorescent reporter genes, as determined by FACS analysis. ES cells that underwent recombination were further analyzed for potential to differentiate towards the neural lineage and differentiated cells were analyzed by FACS for expression of neural markers. RESULTS: (A) Electroporation of EGFP mRNA in mouse ES cells resulted in high level transgene expression (>90% EGFP positive cells) combined with low electroporation-induced cell mortality (>90% viable cells). Moreover, the electroporation procedure did not influence ES cell phenotype and further cell culture of undifferentiated ES cell populations. Electroporation of mRNA encoding Cre- or FLPe-recombinase proteins in stably-transfected mouse ES cell lines containing LoxP- or FRT-flanked reporter genes resulted in a recombination efficiency of respectively 75% and 90%. Moreover, these recombination events did not have influence on ES cell phenotype, viability, growth potential, and their ability to differentiate towards neural cell types upon retinoic acid stimulation. (B) Although human ES cells are much more sensitive as compared to mouse ES cells, we were able to develop improved culture and electroporation conditions for feeder-free maintained H9 human ES cells, which resulted in high level transgene expression (>90% EGFP+ cells) combined with high cell viability (>90% viable cells) after EGFP mRNA electroporation. CONCLUSIONS: RNA electroporation is a highly efficient method for short-term genetic loading of both mouse and human ES cells. Ongoing research now focuses on either short-term (via direct mRNA electroporation) or sustained (via mRNA-based FLPe-recombination) expression of transcription factors in ES cells and their influence on cell-fate within in vitro cultured embryoid bodies.


Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 1259-1259
Author(s):  
Charlie Mantel ◽  
Ying Guo ◽  
Hirohiko Shibayama ◽  
Seiji Fukuda ◽  
Mervin C. Yoder ◽  
...  

Abstract Chromosomal replication and cell division are inherently genotoxic processes, especially in rapidly proliferating cells like ES cell lines and expanding hematopoietic stem/progenitors. Metazoan animals have a very efficient system to ensure genome fidelity. It is comprised of two interdependent branches. First are cell cycle checkpoints that detect genetic damage and delay cell cycle progression to allow time for repair. Second is apoptosis, an orderly elimination of cells damaged beyond the capability to be repaired. Defects in either of these branches contribute to spontaneous tumorigenesis and genetic instability. Evidence exists in various species that checkpoint signals are transient. Down-regulation of these cell cycle delaying signals occurs after repair, called “recovery”, or without repair, called “adaptation”. However, there is no clear evidence of checkpoint adaptation reported in mammals. Mouse ES cell lines (mES) are highly unstable, genetically and epigenetically, but the mechanism of this genetic infidelity is unknown. It is controversial whether human ES cell lines are likewise unstable, but an understanding of the mechanisms of instability in mouse model mES could be useful. Here, for the first time, we provide evidence of checkpoint adaptation in genomically stressed mES. There is failure of the checkpoint adaptation branch of genome surveillance to activate the apoptosis branch, resulting in aberrant cell cycle progression and polyploidy/aneuploidy. Treatment of E14, R1, CCE, or JSR mES with nocodazole, taxol, or etoposide induced polyploidization (8N DNA content) in as much as 50% of cells measured by bivariate flow analysis of phosphorylation of histone H3 and DNA content. This was accompanied by a low level (12–15%) of apoptosis measured by intracellular activated caspase-3. Moreover, caspase-3 was not activated in polyploid cells. This situation is reversed during embryoid body formation and differentiation to various lineages including primitive hematopoietic cells. Etoposide treatment resulted in nearly total cell death. Importantly, no polyploidization occurred, and the cells apoptose from 4N (not 8N). A screen of activation state (site-specific phosphorylation) of 10 DNA-damage checkpoint-relevant signaling intermediates (including pCHK1, pCDC25c, pCDC2, p53) suggested that all were phosphorylated by etoposide, indicating that damage was detected and the cell cycle was suspended as in somatic cells. Thus the checkpoint branch may not be responsible for apoptosis failure. This pattern of checkpoint adaptation, failure to initiate apoptosis, and polyploidization is mimicked in highly differentiated, pre-B lymphocyte cell line, Ba/F3, by suppressing apoptosis via Survivin or Anamorsin overexpression. Overexpression of Survivin resulted in 4-fold decreased etoposide-induced apoptosis concomitant with 4-fold increased polyploidy. Taxol caused similar results. We suggest that undifferentiated mES are insensitive to genotoxic-stress-induced cell death because of checkpoint adaptation without apoptosis as the endpoint. This could be due to uncoupling of the two branches of the genome-surveillance system. Uncoupling could be a mechanism for spontaneous genetic instability in mES and may have implications for human ES cell lines, cancer-linked genetic instability, and ex-vivo expanded HSCs.


2012 ◽  
Vol 24 (1) ◽  
pp. 285 ◽  
Author(s):  
Huseyin Sumer ◽  
Jun Liu ◽  
Luis Malaver Ortega ◽  
Paul J. Verma

The generation of ES cell lines in ruminants, including cattle and sheep, has been inefficient with putative ESCs undergoing rapid spontaneous differentiation. Recently direct reprogramming of rodent and primate somatic cells to induced Pluripotent Stem Cells (iPSC) is possible simply by forcing expression of a handful of transcription factors, typically OCT3/4, SOX2, KLF4 and cMYC (OSKM). Using a similar approach we have identified that addition of NANOG to the reprogramming cocktail was essential for the generation of stable bovine induced pluripotent stem cells (biPSC). Conversely, generation of reprogrammed sheep iPS (siPSC) cells was achieved by transduction of four factors (OSKM) alone. Significantly, at passage 17 the siPS cells showed silencing of the OSKM transgenes with concomitant reactivation of endogenous pluripotent genes, including OCT4, SOX2 and NANOG. The generation of stable ruminant pluripotent cell lines paves the way for the use of these cells for both biomedical research and agricultural outcomes.


2007 ◽  
Vol 27 (1) ◽  
pp. 45-52
Author(s):  
Koh-ichi Atoh ◽  
Manae S. Kurokawa ◽  
Hideshi Yoshikawa ◽  
Chieko Masuda ◽  
Erika Takada ◽  
...  

2021 ◽  
Vol 22 (11) ◽  
pp. 5902
Author(s):  
Stefan Nagel ◽  
Claudia Pommerenke ◽  
Corinna Meyer ◽  
Hans G. Drexler

Recently, we documented a hematopoietic NKL-code mapping physiological expression patterns of NKL homeobox genes in human myelopoiesis including monocytes and their derived dendritic cells (DCs). Here, we enlarge this map to include normal NKL homeobox gene expressions in progenitor-derived DCs. Analysis of public gene expression profiling and RNA-seq datasets containing plasmacytoid and conventional dendritic cells (pDC and cDC) demonstrated HHEX activity in both entities while cDCs additionally expressed VENTX. The consequent aim of our study was to examine regulation and function of VENTX in DCs. We compared profiling data of VENTX-positive cDC and monocytes with VENTX-negative pDC and common myeloid progenitor entities and revealed several differentially expressed genes encoding transcription factors and pathway components, representing potential VENTX regulators. Screening of RNA-seq data for 100 leukemia/lymphoma cell lines identified prominent VENTX expression in an acute myelomonocytic leukemia cell line, MUTZ-3 containing inv(3)(q21q26) and t(12;22)(p13;q11) and representing a model for DC differentiation studies. Furthermore, extended gene analyses indicated that MUTZ-3 is associated with the subtype cDC2. In addition to analysis of public chromatin immune-precipitation data, subsequent knockdown experiments and modulations of signaling pathways in MUTZ-3 and control cell lines confirmed identified candidate transcription factors CEBPB, ETV6, EVI1, GATA2, IRF2, MN1, SPIB, and SPI1 and the CSF-, NOTCH-, and TNFa-pathways as VENTX regulators. Live-cell imaging analyses of MUTZ-3 cells treated for VENTX knockdown excluded impacts on apoptosis or induced alteration of differentiation-associated cell morphology. In contrast, target gene analysis performed by expression profiling of knockdown-treated MUTZ-3 cells revealed VENTX-mediated activation of several cDC-specific genes including CSFR1, EGR2, and MIR10A and inhibition of pDC-specific genes like RUNX2. Taken together, we added NKL homeobox gene activities for progenitor-derived DCs to the NKL-code, showing that VENTX is expressed in cDCs but not in pDCs and forms part of a cDC-specific gene regulatory network operating in DC differentiation and function.


BMC Biology ◽  
2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Alexandre Z. Daly ◽  
Lindsey A. Dudley ◽  
Michael T. Peel ◽  
Stephen A. Liebhaber ◽  
Stephen C. J. Parker ◽  
...  

Abstract Background The pituitary gland is a neuroendocrine organ containing diverse cell types specialized in secreting hormones that regulate physiology. Pituitary thyrotropes produce thyroid-stimulating hormone (TSH), a critical factor for growth and maintenance of metabolism. The transcription factors POU1F1 and GATA2 have been implicated in thyrotrope fate, but the transcriptomic and epigenomic landscapes of these neuroendocrine cells have not been characterized. The goal of this work was to discover transcriptional regulatory elements that drive thyrotrope fate. Results We identified the transcription factors and epigenomic changes in chromatin that are associated with differentiation of POU1F1-expressing progenitors into thyrotropes using cell lines that represent an undifferentiated Pou1f1 lineage progenitor (GHF-T1) and a committed thyrotrope line that produces TSH (TαT1). We compared RNA-seq, ATAC-seq, histone modification (H3K27Ac, H3K4Me1, and H3K27Me3), and POU1F1 binding in these cell lines. POU1F1 binding sites are commonly associated with bZIP transcription factor consensus binding sites in GHF-T1 cells and Helix-Turn-Helix (HTH) or basic Helix-Loop-Helix (bHLH) factors in TαT1 cells, suggesting that these classes of transcription factors may recruit or cooperate with POU1F1 binding at unique sites. We validated enhancer function of novel elements we mapped near Cga, Pitx1, Gata2, and Tshb by transfection in TαT1 cells. Finally, we confirmed that an enhancer element near Tshb can drive expression in thyrotropes of transgenic mice, and we demonstrate that GATA2 enhances Tshb expression through this element. Conclusion These results extend the ENCODE multi-omic profiling approach to the pituitary gland, which should be valuable for understanding pituitary development and disease pathogenesis. Graphical abstract


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