From diversity to delivery: the case of the Indian Genome Variation initiative

2008 ◽  
Vol 9 (S1) ◽  
pp. S9-S14 ◽  
Author(s):  
Billie-Jo Hardy ◽  
Béatrice Séguin ◽  
Peter A. Singer ◽  
Mitali Mukerji ◽  
Samir K. Brahmachari ◽  
...  
Keyword(s):  
Genome Variation ◽  
Indian Genome

scholarly journals Mitochondrial Genome Variation Affects Multiple Respiration and Nonrespiration Phenotypes inSaccharomyces cerevisiae

Genetics ◽  
2018 ◽  
Vol 211 (2) ◽  
pp. 773-786 ◽  
Author(s):  
Sriram Vijayraghavan ◽  
Stanislav G. Kozmin ◽  
Pooja K. Strope ◽  
Daniel A. Skelly ◽  
Zhenguo Lin ◽  
...  
Keyword(s):  
Mitochondrial Genome ◽  
Genome Variation

Human genome variation

2013 ◽  
pp. 43-94
Author(s):  
Mark Jobling ◽  
Edward Hollox ◽  
Matthew Hurles ◽  
Toomas Kivisild ◽  
Chris Tyler-Smith
Keyword(s):  
Human Genome ◽  
Genome Variation

scholarly journals The Bovine Genome Variation Database (BGVD): Integrated Web-database for Bovine Sequencing Variations and Selective Signatures

2019 ◽  
Author(s):  
Ningbo Chen ◽  
Weiwei Fu ◽  
Jianbang Zhao ◽  
Jiafei Shen ◽  
Qiuming Chen ◽  
...  
Keyword(s):  
Bovine Genome ◽  
Distribution Patterns ◽  
Global Scale ◽  
Genomic Region ◽  
Genome Browser ◽  
Web Database ◽  
Genome Variation ◽  
Gene Search ◽  
Variation Database ◽  
Coordinate Conversion

AbstractNext-generation sequencing has yielded a vast amount of cattle genomic data for the global characterization of population genetic diversity and the identification of regions of the genome under natural and artificial selection. However, efficient storage, querying and visualization of such large datasets remain challenging. Here, we developed a comprehensive Bovine Genome Variation Database (BGVD, http://animal.nwsuaf.edu.cn/BosVar) that provides six main functionalities: Gene Search, Variation Search, Genomic Signature Search, Genome Browser, Alignment Search Tools and the Genome Coordinate Conversion Tool. The BGVD contains information on genomic variations comprising ∼60.44 M SNPs, ∼6.86 M indels, 76,634 CNV regions and signatures of selective sweeps in 432 samples from modern cattle worldwide. Users can quickly retrieve distribution patterns of these variations for 54 cattle breeds through an interactive source of breed origin map using a given gene symbol or genomic region for any of the three versions of the bovine reference genomes (ARS-UCD1.2, UMD3.1.1, and Btau 5.0.1). Signals of selection are displayed as Manhattan plots and Genome Browser tracks. To further investigate and visualize the relationships between variants and signatures of selection, the Genome Browser integrates all variations, selection data and resources from NCBI, the UCSC Genome Browser and AnimalQTLdb. Collectively, all these features make the BGVD a useful archive for in-depth data mining and analyses of cattle biology and cattle breeding on a global scale.

scholarly journals New Draft Genome Sequence of the Ergot Disease Fungus Claviceps paspali

2020 ◽  
Vol 9 (29) ◽  
Author(s):  
H. Oberti ◽  
E. Abreo ◽  
R. Reyno ◽  
M. Feijoo ◽  
S. Murchio ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Genome Variation ◽  
Content Type ◽  
Claviceps Paspali

ABSTRACT Here, we report a new draft genome sequence of an isolate of the ascomycete Claviceps paspali that is responsible for ergot disease in grasses of the Paspalum genus. This new draft genome sequence will provide useful data for evaluating intraspecies and interspecies genome variation in C. paspali and other Claviceps genus members.

Sign in / Sign up

Export Citation Format

Share Document