Accurate phylogenetic classification of variable-length DNA fragments

2006 ◽  
Vol 4 (1) ◽  
pp. 63-72 ◽  
Author(s):  
Alice Carolyn McHardy ◽  
Héctor García Martín ◽  
Aristotelis Tsirigos ◽  
Philip Hugenholtz ◽  
Isidore Rigoutsos
Keyword(s):  
Variable Length ◽  
Dna Fragments ◽  
Phylogenetic Classification

scholarly journals Phylogenetic classification of short environmental DNA fragments

2008 ◽  
Vol 36 (7) ◽  
pp. 2230-2239 ◽  
Author(s):  
Lutz Krause ◽  
Naryttza N. Diaz ◽  
Alexander Goesmann ◽  
Scott Kelley ◽  
Tim W. Nattkemper ◽  
...  
Keyword(s):  
Environmental Dna ◽  
Dna Fragments ◽  
Phylogenetic Classification

Isolation and phylogenetic classification of culturable psychrophilic prokaryotes from the Collins glacier in the Antarctica

2011 ◽  
Vol 56 (3) ◽  
pp. 209-214 ◽  
Author(s):  
S. A. García-Echauri ◽  
M. Gidekel ◽  
A. Gutiérrez-Moraga ◽  
L. Santos ◽  
A. De León-Rodríguez
Keyword(s):  
Phylogenetic Classification

scholarly journals Phylogenetic classification of bony fishes

2017 ◽  
Vol 17 (1) ◽  
Author(s):  
Ricardo Betancur-R ◽  
Edward O. Wiley ◽  
Gloria Arratia ◽  
Arturo Acero ◽  
Nicolas Bailly ◽  
...  
Keyword(s):  
Phylogenetic Classification ◽  
Bony Fishes

scholarly journals A higher-level phylogenetic classification of the Fungi

2007 ◽  
Vol 111 (5) ◽  
pp. 509-547 ◽  
Author(s):  
David S. Hibbett ◽  
Manfred Binder ◽  
Joseph F. Bischoff ◽  
Meredith Blackwell ◽  
Paul F. Cannon ◽  
...  
Keyword(s):  
Phylogenetic Classification

scholarly journals Molecular Characterization and Classification of Phytoplasmas Associated with Canola Yellows and a New Phytoplasma Strain Associated with Dandelions

Plant Disease ◽  
2001 ◽  
Vol 85 (1) ◽  
pp. 76-79 ◽  
Author(s):  
Keri Wang ◽  
Chuji Hiruki
Keyword(s):  
Fragment Length Polymorphism ◽  
Rflp Analysis ◽  
Universal Primers ◽  
Dna Fragments ◽  
Chain Reaction ◽  
Aster Yellows ◽  
Distinct Subgroup ◽  
16S Ribosomal Dna ◽  
Polymerase Chain

DNA isolated from symptomatic canola (Brassica napus, Brassica rapa) and dandelion (Taraxacum officinale) was used to amplify 16S ribosomal DNA fragments by polymerase chain reaction using two pairs of universal primers P1/P6 and R16F2n/R2. Restriction fragment length polymorphism (RFLP) analysis of the amplified DNA fragments using endonucleases AluI, HhaI, HpaII, MseI, RsaI, and Sau 3AI revealed two distinct types of phytoplasmas in canola with similar symptoms. One had the same RFLP profiles as the phytoplasmas in subgroup 16SrI-A, whereas the other one had RFLP profiles similar to those of phytoplasmas in subgroup 16SrI-B. Phytoplasmas were detected in symptomatic dandelion plants that were collected from canola and alfalfa fields where severe alfalfa witches'-broom occurred. Comparative studies indicated that two different phytoplasmas were associated with the dandelion plants. One was identified as a member of subgroup 16SrI-A, whereas another one was classified as a member of a distinct subgroup in the aster yellows group on the basis of the unique RFLP patterns.

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