scholarly journals Crosstalk between MSH2–MSH3 and polβ promotes trinucleotide repeat expansion during base excision repair

2016 ◽  
Vol 7 (1) ◽  
Author(s):  
Yanhao Lai ◽  
Helen Budworth ◽  
Jill M. Beaver ◽  
Nelson L. S. Chan ◽  
Zunzhen Zhang ◽  
...  
2015 ◽  
Vol 43 (12) ◽  
pp. 5948-5960 ◽  
Author(s):  
Jill M. Beaver ◽  
Yanhao Lai ◽  
Meng Xu ◽  
Astrid H. Casin ◽  
Eduardo E. Laverde ◽  
...  

DNA Repair ◽  
2020 ◽  
Vol 93 ◽  
pp. 102912
Author(s):  
Yanhao Lai ◽  
Jill M. Beaver ◽  
Eduardo Laverde ◽  
Yuan Liu

2020 ◽  
Vol 295 (40) ◽  
pp. 13902-13913
Author(s):  
Eduardo E. Laverde ◽  
Yanhao Lai ◽  
Fenfei Leng ◽  
Lata Balakrishnan ◽  
Catherine H. Freudenreich ◽  
...  

Trinucleotide repeat (TNR) expansion and deletion are responsible for over 40 neurodegenerative diseases and associated with cancer. TNRs can undergo somatic instability that is mediated by DNA damage and repair and gene transcription. Recent studies have pointed toward a role for R-loops in causing TNR expansion and deletion, and it has been shown that base excision repair (BER) can result in CAG repeat deletion from R-loops in yeast. However, it remains unknown how BER in R-loops can mediate TNR instability. In this study, using biochemical approaches, we examined BER enzymatic activities and their influence on TNR R-loops. We found that AP endonuclease 1 incised an abasic site on the nontemplate strand of a TNR R-loop, creating a double-flap intermediate containing an RNA:DNA hybrid that subsequently inhibited polymerase β (pol β) synthesis of TNRs. This stimulated flap endonuclease 1 (FEN1) cleavage of TNRs engaged in an R-loop. Moreover, we showed that FEN1 also efficiently cleaved the RNA strand, facilitating pol β loop/hairpin bypass synthesis and the resolution of TNR R-loops through BER. Consequently, this resulted in fewer TNRs synthesized by pol β than those removed by FEN1, thereby leading to repeat deletion. Our results indicate that TNR R-loops preferentially lead to repeat deletion during BER by disrupting the balance between the addition and removal of TNRs. Our discoveries open a new avenue for the treatment and prevention of repeat expansion diseases and cancer.


2021 ◽  
Vol 14 ◽  
Author(s):  
Mário Gomes-Pereira ◽  
Darren G. Monckton

More than 30 human disorders are caused by the expansion of simple sequence DNA repeats, among which triplet repeats remain the most frequent. Most trinucleotide repeat expansion disorders affect primarily the nervous system, through mechanisms of neurodysfunction and/or neurodegeneration. While trinucleotide repeat tracts are short and stably transmitted in unaffected individuals, disease-associated expansions are highly dynamic in the germline and in somatic cells, with a tendency toward further expansion. Since longer repeats are associated with increasing disease severity and earlier onset of symptoms, intergenerational repeat size gains account for the phenomenon of anticipation. In turn, higher levels of age-dependent somatic expansion have been linked with increased disease severity and earlier age of onset, implicating somatic instability in the onset and progression of disease symptoms. Hence, tackling the root cause of symptoms through the control of repeat dynamics may provide therapeutic modulation of clinical manifestations. DNA repair pathways have been firmly implicated in the molecular mechanism of repeat length mutation. The demonstration that repeat expansion depends on functional DNA mismatch repair (MMR) proteins, points to MMR as a potential therapeutic target. Similarly, a role of DNA base excision repair (BER) in repeat expansion has also been suggested, particularly during the removal of oxidative lesions. Using a well-characterized mouse cell model system of an unstable CAG•CTG trinucleotide repeat, we tested if expanded repeat tracts can be stabilized by small molecules with reported roles in both pathways: cadmium (an inhibitor of MMR activity) and a variety of antioxidants (capable of neutralizing oxidative species). We found that chronic exposure to sublethal doses of cadmium and antioxidants did not result in significant reduction of the rate of trinucleotide repeat expansion. Surprisingly, manganese yielded a significant stabilization of the triplet repeat tract. We conclude that treatment with cadmium and antioxidants, at doses that do not interfere with cell survival and cell culture dynamics, is not sufficient to modify trinucleotide repeat dynamics in cell culture.


PLoS ONE ◽  
2018 ◽  
Vol 13 (2) ◽  
pp. e0192148 ◽  
Author(s):  
Jill M. Beaver ◽  
Yanhao Lai ◽  
Shantell J. Rolle ◽  
Liwei Weng ◽  
Marc M. Greenberg ◽  
...  

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