scholarly journals Global protein function prediction from protein-protein interaction networks

2003 ◽  
Vol 21 (6) ◽  
pp. 697-700 ◽  
Author(s):  
Alexei Vazquez ◽  
Alessandro Flammini ◽  
Amos Maritan ◽  
Alessandro Vespignani
Keyword(s):  
Protein Interaction ◽  
Protein Function ◽  
Protein Function Prediction ◽  
Function Prediction ◽  
Protein Interaction Networks ◽  
Interaction Networks ◽  
Protein Protein Interaction ◽  
Protein Protein Interaction Networks

scholarly journals Going the Distance for Protein Function Prediction: A New Distance Metric for Protein Interaction Networks

PLoS ONE ◽  
2013 ◽  
Vol 8 (10) ◽  
pp. e76339 ◽  
Author(s):  
Mengfei Cao ◽  
Hao Zhang ◽  
Jisoo Park ◽  
Noah M. Daniels ◽  
Mark E. Crovella ◽  
...  
Keyword(s):  
Protein Interaction ◽  
Protein Function ◽  
Protein Function Prediction ◽  
Function Prediction ◽  
Protein Interaction Networks ◽  
Interaction Networks ◽  
Distance Metric

scholarly journals IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, Mapping and Mining ANalysis

2016 ◽  
Author(s):  
Minoo Ashtinai ◽  
Payman Nickchi ◽  
Soheil Jahangiri-Tazehkand ◽  
Abdollah Safari ◽  
Mehdi Mirzaie ◽  
...  
Keyword(s):  
Protein Function ◽  
Protein Function Prediction ◽  
Protein Interaction Networks ◽  
Interaction Networks ◽  
Protein Network ◽  
Supplementary Information ◽  
Protein Protein Interaction ◽  
Link Type ◽  
Supplementary Material ◽  
Protein Protein Interaction Networks

SummaryIMMAN is a software for reconstructing Interolog Protein Network (IPN) by integrating several Protein-protein Interaction Networks (PPIN). Users can unify different PPINs to mine conserved common network among species. IMMAN helps to retrieve IPNs with different degrees of conservation to engage for protein function prediction analysis based on protein networks.AvailabilityIMMAN is freely available at https://bioconductor.org/packages/IMMAN, http://profiles.bs.ipm.ir/softwares/IMMAN/[email protected], [email protected], [email protected] informationSupplementary data are available online.

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