scholarly journals Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis

2003 ◽  
Vol 21 (5) ◽  
pp. 526-531 ◽  
Author(s):  
Haruo Ikeda ◽  
Jun Ishikawa ◽  
Akiharu Hanamoto ◽  
Mayumi Shinose ◽  
Hisashi Kikuchi ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Streptomyces Avermitilis ◽  
Industrial Microorganism

scholarly journals Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

2003 ◽  
Vol 5 (7) ◽  
pp. 630-630 ◽  
Author(s):  
K. E. Nelson ◽  
C. Weinel ◽  
I. T. Paulsen ◽  
R. J. Dodson ◽  
H. Hilbert ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Pseudomonas Putida ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pseudomonas Putida Kt2440

scholarly journals Complete Genome Sequence of Brucella canis Strain 118, a Strain Isolated from Canine

2012 ◽  
Vol 194 (23) ◽  
pp. 6680-6680 ◽  
Author(s):  
Guangjun Gao ◽  
Jing Li ◽  
Tiefeng Li ◽  
Zhengfang Zhang ◽  
Liping Wang ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Host Adaptation ◽  
Host Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Brucella Canis

ABSTRACTBrucella canisinfects several species of animals, and canine is the preferred host. Genome sequences of strains from different hosts are valuable for comparative analysis of host adaptation and microevolution. Here, we report the genome sequence ofBrucella canisstrain 118, a strain isolated from canine.

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

2002 ◽  
Vol 4 (12) ◽  
pp. 799-808 ◽  
Author(s):  
K. E. Nelson ◽  
C. Weinel ◽  
I. T. Paulsen ◽  
R. J. Dodson ◽  
H. Hilbert ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Pseudomonas Putida ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pseudomonas Putida Kt2440

scholarly journals Complete genome sequence of Xylella taiwanensis and comparative analysis of virulence gene content with Xylella fastidiosa

2021 ◽  
Author(s):  
Ling-Wei Weng ◽  
Yu-Chen Lin ◽  
Chiou-Chu Su ◽  
Ching-Ting Huang ◽  
Shu-Ting Cho ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Plant Pathogens ◽  
Virulence Genes ◽  
Xylella Fastidiosa ◽  
Hydrolytic Enzymes ◽  
Strong Support ◽  
Gene Content

AbstractThe bacterial genus Xylella contains plant pathogens that are major threats to agriculture worldwide. Although extensive research was conducted to characterize different subspecies of Xylella fastidiosa (Xf), comparative analysis at above-species levels were lacking due to the unavailability of appropriate data sets. Recently, a bacterium that causes pear leaf scorch (PLS) in Taiwan was described as the second Xylella species (i.e., Xylella taiwanensis; Xt). In this work, we report the complete genome sequence of Xt type strain PLS229T. The genome-scale phylogeny provided strong support that Xf subspecies pauca (Xfp) is the basal lineage of this species and Xylella was derived from the paraphyletic genus Xanthomonas. Quantification of genomic divergence indicated that different Xf subspecies share ~87-95% of their genomic segments, while the two Xylella species share only ~66-70%. Analysis of overall gene content suggested that Xt is most similar to Xf subspecies sandyi (Xfs). Based on the existing knowledge of Xf virulence genes, the homolog distribution among 28 Xylella representatives was examined. Among the 10 functional categories, those involved in secretion, metabolism, and stress response are the most conserved ones with no copy number variation. In contrast, several genes related to adhesins, hydrolytic enzymes, and toxin-antitoxin systems are highly variable in their copy numbers. Those virulence genes with high levels of conservation or variation may be promising candidates for future studies. In summary, the new genome sequence and analysis reported in this work contributed to the study of several important pathogens in the family Xanthomonadaceae.

The complete genome sequence of Indian Sheeppox vaccine virus and comparative analysis with other capripoxviruses

Gene ◽  
2021 ◽  
pp. 146085
Author(s):  
Amit Kumar ◽  
Gnanavel Venkatesan ◽  
M. Hosamani ◽  
V. Bhanuprakash ◽  
V. Balamurugan ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Vaccine Virus

scholarly journals Complete Genome Sequence of the Larvicidal BacteriumLysinibacillus sphaericusStrain OT4b.25

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Andrés Rey ◽  
Laura Silva-Quintero ◽  
Jenny Dussán
Keyword(s):  
Comparative Analysis ◽  
Genome Sequence ◽  
Culex Quinquefasciatus ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Reference Strain ◽  
Oak Forest ◽  
Sequencing Technology ◽  
Lysinibacillus Sphaericus ◽  
Pathogenic Activity

Lysinibacillus sphaericusOT4b.25 is a native Colombian strain isolated from coleopteran larvae in an oak forest near Bogotá D.C.; this strain has shown high levels of pathogenic activity againstCulex quinquefasciatuslarvae in laboratory assays compared to that of other members of the same species. Using Pacific Biosciences sequencing technology, we propose a chromosomal contig of 4,665,775 bp that, according to comparative analysis, is highly similar to that of reference strainL. sphaericusC3-41.

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